1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ggtgagcactatagacaattgagtaaccctcaagagacttgagatttggatcactgttttccttaacttataattagttgtttttcttctttctattcagGTTGAGATGATTCTTCAAGCATTGGAGTATGAAAAGG
species | Oryza sativa |
transcript | LOC_Os02g08260.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGAGCAGAATGCCACTTTGGAAGCAAAGGTTGTGAAAGATTTTGACAAG GTTGAGATGATTCTTCAAGCATTGGAGTATGAAAAGGEST: gi|86257580|gb|CI004397.1|CI004397
genomic: ATGAGCAGAATGCCACTTTGGAAGCAAAGGTTGTGAAAGATTTTGACAAGgtacagtttt ... ttctattcagGTTGAGATGATTCTTCAAGCATTGGAGTATGAAAAGG
EST: ATGAGCAGAATGCCACTTTGGAAGCAAAGGTTGTGAAAGATTTTGACAAG GTTGAGATGATTCTTCAAGCATTGGAGTATGAAAAGGEST: gi|38481633|gb|CF965722.1|CF965722
genomic: ATGAGCAGAATGCCACTTTGGAAGCAAAGGTTGTGAAAGATTTTGACAAGgtacagtttt ... ttctattcagGTTGAGATGATTCTTCAAGCATTGGAGTATGAAAAGG
EST: ATGAGCAGAATGCCACTTTGGAAGCAAAGGTTGTGAAAGATTTTGACAAG GTTGAGATGATTCTTCAAGCATTGGAGTATGAAAAGGEST: gi|88203732|gb|CI203581.1|CI203581
genomic: ATGAGCAGAATGCCACTTTGGAAGCAAAGGTTGTGAAAGATTTTGACAAGgtacagtttt ... ttctattcagGTTGAGATGATTCTTCAAGCATTGGAGTATGAAAAGG
EST: TGAGCAGAATGCCACTTTGGAAGCAAAGGTTTGTGAAAGATTTTGACAAG GTTGAGATGATTCTTCAAGCATTGGAGTATGAAAAGG
genomic: TGAGCAGAATGCCACTTTGGAAGCAAAGG-TTGTGAAAGATTTTGACAAGgtacagtttt ... ttctattcagGTTGAGATGATTCTTCAAGCATTGGAGTATGAAAAGG
ttggatcactgttttccttaacttataattagttgtttttcttctttctattcagGTTGAGATGATTCTTCAAGCATTGGAGTATGAAAAGG
ccttaac putative branch site (score: 22)
ttgtttttcttctttc putative PPT
ttaacttataattagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtgagcactatagacaattgagtaaccctcaagagacttgagatttggatcactgttttccttaacttataattagttgtttttcttctttctattcagGTTGAGATGATTCTTCAAGCATTGGAGTATGAAAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG