1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagtcctctgaagcaaccatgatatgatacgattcttcatgatatttctattaactgtttgaatttcatttgattagTGTATAAGAAGCACTACCCACCTGCGTTGAAAGATGAGGTCTGGAGGTTAGAAAAGATAGGGAAGGATGGATCTTTCCATAAGAGACTGAACAAAGCTGG
species | Oryza sativa |
transcript | LOC_Os02g08120.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCAAAAACTGAAGCTTTCATGGTTAAGGACCACAGAGGAGAAT TGTATAAGAAGCACTACCCACCTGCGTTGAAAGATGAGGTCTGGAGGTTAGEST: gi|58613149|gb|CK040861.1|CK040861
genomic: GCAAAAACTGAAGCTTTCATGGTTAAGGACCACAGAGGAGAATgtaagtcctc ... atttgattagTGTATAAGAAGCACTACCCACCTGCGTTGAAAGATGAGGTCTGGAGGTTAG
EST: CCGCGAGGCAAAAACTGAAGCTTTCATGGTTAAGGACCACAGAGGAGAAT TGTATAAGAAGCACTACCCACCTGCGTTGAAAGATGAGGTCTGGAGGTTAGEST: gi|58695258|gb|CK083945.1|CK083945
genomic: CCGCGAGGCAAAAACTGAAGCTTTCATGGTTAAGGACCACAGAGGAGAATgtaagtcctc ... atttgattagTGTATAAGAAGCACTACCCACCTGCGTTGAAAGATGAGGTCTGGAGGTTAG
EST: CCGCGAGGCAAAAACTGAAGCTTTCATGGTTAAGGACCACAGAGGAGAAT TGTATAAGAAGCACTACCCACCTGCGTTGAAAGATGAGG
genomic: CCGCGAGGCAAAAACTGAAGCTTTCATGGTTAAGGACCACAGAGGAGAATgtaagtcctc ... atttgattagTGTATAAGAAGCACTACCCACCTGCGTTGAAAGATGAGG
tatgatacgattcttcatgatatttctattaactgtttgaatttcatttgattagTGTATAAGAAGCACTACCCACCTGCGTTGAAAGATGAGGTCTGGAGGTTAGAAAAGATAGGGAAGGATGGATCTTTCCATAAGAGACTGAACAAAGCTGG
tattaac putative branch site (score: 1)
tttcattt putative PPT
atgatatttctattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcctctgaagcaaccatgatatgatacgattcttcatgatatttctattaactgtttgaatttcatttgattagTGTATAAGAAGCACTACCCACCTGCGTTGAAAGATGAGGTCTGGAGGTTAGAAAAGATAGGGAAGGATGGATCTTTCCATAAGAGACTGAACAAAGCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG