1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...catttgtgtttggctagttatatattatagctcacttttcctttattactgttctggtaacattgtttgtctttgtttgggacatccatattttttgcagGACCCCTGTCGCCCTGGGGTAAGAAATGCTGTAGATCTGTGCAAAAATGCTGGTGTAAAG
species | Oryza sativa |
transcript | LOC_Os02g08010.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGG-ATCGTAGGGATGAAG GACCCCTGTCGCCCTGGGGTAAGAAATGCTGTAGATCTGTGCAAAAATGCGEST: gi|29629735|gb|CB634744.1|CB634744
genomic: TTGGAATCGTAGGGATGAAGgtacatgcaa ... ttttttgcagGACCCCTGTCGCCCTGGGGTAAGAAATGCTGTAGATCTGTGCAAAAATGCT
EST: GGGAATTACCAGATAATGAACTGGCTCTCATTGGAATCGTAGGGATGAAG GACCCCTGTCGCCCTGNGGTAAGAAATGCTGTAGATCTGTGCAAAAATGCT
genomic: GGGAATTACCAGATAATGAACTGGCTCTCATTGGAATCGTAGGGATGAAGgtacatgcaa ... ttttttgcagGACCCCTGTCGCCCTGGGGTAAGAAATGCTGTAGATCTGTGCAAAAATGCT
ttactgttctggtaacattgtttgtctttgtttgggacatccatattttttgcagGACCCCTGTCGCCCTGGGGTAAGAAATGCTGTAGATCTGTGCAAAAATGCTGGTGTAAAG
tggtaac putative branch site (score: 22)
tatttttt putative PPT
atatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catttgtgtttggctagttatatattatagctcacttttcctttattactgttctggtaacattgtttgtctttgtttgggacatccatattttttgcagGACCCCTGTCGCCCTGGGGTAAGAAATGCTGTAGATCTGTGCAAAAATGCTGGTGTAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- -ttgtgtt
- - - - - - - - - - - - - - - - - - - - - - - - -tgttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catccat