1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttatatttgttttgttacatattaatttattccgtttaatatggttgtctcggaggagtataactgtataactaatttcattctgctatttaatcaacagCGTGGTGGAAATCTTGCTATGCTTGCTGAACGCTTTCTACATGAGGTGGCATTTAAGCTCTGGAAAGCTCCTAAATATGGAGCTTAAATCTGCCTGAGAA
species | Oryza sativa |
transcript | LOC_Os02g04260.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTACACGCTCTGATTTGACCGAAGGGTTCTCTTTTGAGGAATTCATAAAG CGTGGTGGAAATCTTGCTATGCTTGCTGAACGCTTTCTACATGAGGTGGCAEST: gi|116875618|gb|EC366126.1|EC366126
genomic: TTACACGCTCTGATTTGACCGAAGGGTTCTCTTTTGAGGAATTCATAAAGgtttgtataa ... taatcaacagCGTGGTGGAAATCTTGCTATGCTTGCTGAACGCTTTCTACATGAGGTGGCA
EST: TTACACGCTCTGATTTGACCGAAGGGTTCTCTTTTGAGGAATTCATAAAG CGTGGTGGAAATCTTGCTATGCTTGCTGAACGCTTTCTACATGAGGTGGCAEST: gi|86501520|gb|CI144153.1|CI144153
genomic: TTACACGCTCTGATTTGACCGAAGGGTTCTCTTTTGAGGAATTCATAAAGgtttgtataa ... taatcaacagCGTGGTGGAAATCTTGCTATGCTTGCTGAACGCTTTCTACATGAGGTGGCA
EST: TTACACGCTCTGATTTGACCGAAGGGTTCTCTTTTGAGGAATTCATAAAG CGTGGTGGAAATCTTGCTATGCTTGCTGAACGCTTTCTACATGAGGTGGCAEST: gi|89174615|gb|CI110813.1|CI110813
genomic: TTACACGCTCTGATTTGACCGAAGGGTTCTCTTTTGAGGAATTCATAAAGgtttgtataa ... taatcaacagCGTGGTGGAAATCTTGCTATGCTTGCTGAACGCTTTCTACATGAGGTGGCA
EST: TTACACGCTCTGATTTGACCGAAGGGTTCTCTTTTGAGGAATTCATAAAG CGTGGTGGAAATCTTGCTATGCTTGCTGAACGCTTTCTACATGAGGTGGCAEST: gi|29661826|gb|CB658101.1|CB658101
genomic: TTACACGCTCTGATTTGACCGAAGGGTTCTCTTTTGAGGAATTCATAAAGgtttgtataa ... taatcaacagCGTGGTGGAAATCTTGCTATGCTTGCTGAACGCTTTCTACATGAGGTGGCA
EST: TTACACGCTCTGATTTGACCGAAGGGTTCTCTTTTGAGGAATTCATAAAG CGTGGTGGAAATCTTGCTATGCTTGCTGAACGCTTTCTACATGAGGTGGCAEST: gi|86541090|gb|CI181296.1|CI181296
genomic: TTACACGCTCTGATTTGACCGAAGGGTTCTCTTTTGAGGAATTCATAAAGgtttgtataa ... taatcaacagCGTGGTGGAAATCTTGCTATGCTTGCTGAACGCTTTCTACATGAGGTGGCA
EST: TTACACGCTCTGATTTGACCGAAGGGTTCTCTTTTGAGGAATTCATAAAG CGTGGTGGAAATCTTGCTATGCTTGCTGAACGCTTTCTACATGAGGTGGCAEST: gi|88253368|gb|CI351994.1|CI351994
genomic: TTACACGCTCTGATTTGACCGAAGGGTTCTCTTTTGAGGAATTCATAAAGgtttgtataa ... taatcaacagCGTGGTGGAAATCTTGCTATGCTTGCTGAACGCTTTCTACATGAGGTGGCA
EST: TTACACGCTCTGATTTGACCGAAGGGTTCTCTTTTGAGGAATTCATAAAG CGTGGTGGAAATCTTGCTATGCTTGCTGAACGCTTTCTACATGAGGTGGCAEST: gi|88246086|gb|CI245935.1|CI245935
genomic: TTACACGCTCTGATTTGACCGAAGGGTTCTCTTTTGAGGAATTCATAAAGgtttgtataa ... taatcaacagCGTGGTGGAAATCTTGCTATGCTTGCTGAACGCTTTCTACATGAGGTGGCA
EST: TTACACGCTCTGATTTGACCGAAGGGTTCTCTTTTGAGGAATTCATAAAG CGTGGTGGAAATCTTGCTATGCTTGCTGAACGCTTTCTACATGAGGTGGCAEST: gi|4880964|gb|AU065263.1|AU065263
genomic: TTACACGCTCTGATTTGACCGAAGGGTTCTCTTTTGAGGAATTCATAAAGgtttgtataa ... taatcaacagCGTGGTGGAAATCTTGCTATGCTTGCTGAACGCTTTCTACATGAGGTGGCA
EST: TTACACGCTCTGATTTGACCGAAGG-TTCTCTTTTGAGGAATTCATAAAG CGTGGTGGAAATCNTGCTATGCTTGCTGAANGCTTTCTACATGAAGGTGGCEST: gi|88270802|gb|CI380102.1|CI380102
genomic: TTACACGCTCTGATTTGACCGAAGGGTTCTCTTTTGAGGAATTCATAAAGgtttgtataa ... taatcaacagCGTGGTGGAAATCTTGCTATGCTTGCTGAACGCTTTCTACATGA-GGTGGC
EST: TTACACGCTCTGATTTGACCGAAGGGTTCTCTTTTGAGCAATTCATAAAG CGTGCTGGAAATCTTGCTATGCTTGCTGAAC-CTTTCTACATGAGCTGGCAEST: gi|116874985|gb|EC365493.1|EC365493
genomic: TTACACGCTCTGATTTGACCGAAGGGTTCTCTTTTGAGGAATTCATAAAGgtttgtataa ... taatcaacagCGTGGTGGAAATCTTGCTATGCTTGCTGAACGCTTTCTACATGAGGTGGCA
EST: TTACACGCTCTGATTTGACCGAAGGGTTCTCTTTTGAGGAATTCATAAAG CGTGGTGGAAATCTTGCTATGCTTGCTGAACGCTTTCTACATGAGGTGGCAEST: gi|27920549|gb|CB096357.1|CB096357
genomic: TTACACGCTCTGATTTGACCGAAGGGTTCTCTTTTGAGGAATTCATAAAGgtttgtataa ... taatcaacagCGTGGTGGAAATCTTGCTATGCTTGCTGAACGCTTTCTACATGAGGTGGCA
EST: TTACACGCTCTGATTTGACCGAAGGGTTCTCTTTTGAGGAATTCATAAAG CGTGGTGGAAATCTTGCTATGCTTGCTGAACGCTTTCTACATGAGGTGGCAEST: gi|86863042|gb|CI344821.1|CI344821
genomic: TTACACGCTCTGATTTGACCGAAGGGTTCTCTTTTGAGGAATTCATAAAGgtttgtataa ... taatcaacagCGTGGTGGAAATCTTGCTATGCTTGCTGAACGCTTTCTACATGAGGTGGCA
EST: GAATTCATAAAG CGTGGTGGAAATCTTGCTATGCTTGCTGAACGCTTTCTACATGAGGTGGCA
genomic: GAATTCATAAAGgtttgtataa ... taatcaacagCGTGGTGGAAATCTTGCTATGCTTGCTGAACGCTTTCTACATGAGGTGGCA
tgtctcggaggagtataactgtataactaatttcattctgctatttaatcaacagCGTGGTGGAAATCTTGCTATGCTTGCTGAACGCTTTCTACATGAGGTGGCATTTAAGCTCTGGAAAGCTCCTAAATATGGAGCTTAAATCTGCCTGAGAA
tataactaatttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatatttgttttgttacatattaatttattccgtttaatatggttgtctcggaggagtataactgtataactaatttcattctgctatttaatcaacagCGTGGTGGAAATCTTGCTATGCTTGCTGAACGCTTTCTACATGAGGTGGCATTTAAGCTCTGGAAAGCTCCTAAATATGGAGCTTAAATCTGCCTGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - -tgttttg
- - - - - - - - - - - - - - - - - - - - atggttg