1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttgtcctttagtttgagctagcatcataatccctttcactgatttgagttgcacattacccactgacttttaatatttctgttcgtaaaaatagAGAGCAAATCTGTCTATGTTGGGAACGTGCCATCTTCTGTATCTGAGGCTGATCTTGAGAATGAGTTCAAGAAGTTTGGGCGGCTCATTCCTGATGGTGT
species | Oryza sativa |
transcript | LOC_Os02g03890.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAAGCCAAAAACCGATGTTTATGGTGAATTTGCTGTCCAGGATGATGAAG AGAGCAAATCTGTCTATGTTGGGAACGTGCCATCTTCTGTATCTGAGGCTGEST: gi|112787037|gb|EE591928.1|EE591928
genomic: GAAGCCAAAAACCGATGTTTATGGTGAATTTGCTGTCCAGGATGATGAAGgttgtccttt ... gtaaaaatagAGAGCAAATCTGTCTATGTTGGGAACGTGCCATCTTCTGTATCTGAGGCTG
EST: GAAGCCAAAAACCGATGTTTATGGTGAATTTGCTGTCCAGGATGATGAAG AGAGCAAATCTGTCTATGTTGGGAACGTGCCATCCTCTGTATCTGAGGCTGEST: gi|163920587|gb|EG709594.1|EG709594
genomic: GAAGCCAAAAACCGATGTTTATGGTGAATTTGCTGTCCAGGATGATGAAGgttgtccttt ... gtaaaaatagAGAGCAAATCTGTCTATGTTGGGAACGTGCCATCTTCTGTATCTGAGGCTG
EST: GAAGCCAAAAACCGATGTTTATGGTGAATTTGCTGTCCAGGATGATGAAG AGAGCAAATCTGTCTATGTTGGGAACGTGCCATCTTCTGTATCTGAGGCTGEST: gi|66922134|gb|CX108982.1|CX108982
genomic: GAAGCCAAAAACCGATGTTTATGGTGAATTTGCTGTCCAGGATGATGAAGgttgtccttt ... gtaaaaatagAGAGCAAATCTGTCTATGTTGGGAACGTGCCATCTTCTGTATCTGAGGCTG
EST: GAAGCCAAAAACCGATGTTTATGGTGAATTTGCTGTCCAGGATGATGAAG AGAGCAAATCTGTCTATGTTGGGAACGTGCCATCTTCTGTATCTGAGGCTG
genomic: GAAGCCAAAAACCGATGTTTATGGTGAATTTGCTGTCCAGGATGATGAAGgttgtccttt ... gtaaaaatagAGAGCAAATCTGTCTATGTTGGGAACGTGCCATCTTCTGTATCTGAGGCTG
tgatttgagttgcacattacccactgacttttaatatttctgttcgtaaaaatagAGAGCAAATCTGTCTATGTTGGGAACGTGCCATCTTCTGTATCTGAGGCTGATCTTGAGAATGAGTTCAAGAAGTTTGGGCGGCTCATTCCTGATGGTGT
ttttaatatttctgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgtcctttagtttgagctagcatcataatccctttcactgatttgagttgcacattacccactgacttttaatatttctgttcgtaaaaatagAGAGCAAATCTGTCTATGTTGGGAACGTGCCATCTTCTGTATCTGAGGCTGATCTTGAGAATGAGTTCAAGAAGTTTGGGCGGCTCATTCCTGATGGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT