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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaacccattttttttaaaaaaatattttggtgatcatcatgttcatgcaatcctgagatgcttctttcagGGAACTGCACCAGGTGCTTCAGAAATTAACG

Basic information

species Oryza sativa
transcript LOC_Os02g03580.3
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29670500|gb|CB666775.1|CB666775
EST:     ATCCATTTAATCACTACCCTATGCTGGCAAATGGAAATGTTGAAACTGCT                         GGAACTGCACCAGGTGCTTCAGAAATTAACG
genomic: ATCCATTTAATCACTACCCTATGCTGGCAAATGGAAATGTTGAAACTGCTgtaagtaacc ... cttctttcagGGAACTGCACCAGGTGCTTCAGAAATTAACG
EST: gi|32948093|gb|BP184665.1|BP184665
EST:     ATCCATTTAATCACTACCCTATGCTGGCAAATGGAAATGTTGAAACTGCT                         GGAACTGCACCAGGTGCTTCAGAAATTAACG
genomic: ATCCATTTAATCACTACCCTATGCTGGCAAATGGAAATGTTGAAACTGCTgtaagtaacc ... cttctttcagGGAACTGCACCAGGTGCTTCAGAAATTAACG
EST: gi|32948307|gb|BP184879.1|BP184879
EST:     ATCCATTTAATCACTACCCTATGCTGGCAAATGGAAATGTTGAAACTGCT                         GGAACTGCACCAGGTGCTTCAGAAATTAACG
genomic: ATCCATTTAATCACTACCCTATGCTGGCAAATGGAAATGTTGAAACTGCTgtaagtaacc ... cttctttcagGGAACTGCACCAGGTGCTTCAGAAATTAACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaaaatattttggtgatcatcatgttcatgcaatcctgagatgcttctttcagGGAACTGCACCAGGTGCTTCAGAAATTAACG
                                           tgcttctttc  CT-rich tract
     aatatttt  TA-rich tract