1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttcgaccttgatcacatacatagtcctttgggttggtaacaactgcgatcatctgtcttgcatatacttatcgtgctttgattttggtacgcagATATCCTTCTCCTGGATGTGGCACCCCTTACCCTCGGTATCGAGACTGTCGGTGGAGTCATGACCAAGTTGATCCCCAGGAACACCGTCATCCCCACCAA
species | Oryza sativa |
transcript | LOC_Os02g02410.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGCGGTTCAGGGAAGCATTCTCAGCGGCGAGGGCGGTNACGAAACCAAAG ATATCCTTCTCCTGGATGTGGCACCCNTTACCCTCGGTATCGAGACTGTCGEST: gi|29655799|gb|CB652074.1|CB652074
genomic: TGCGGTTCAGGGAAGCATTCTCAGCGGCGAGGGCGGTGACGAAACCAAAGgttcgacctt ... tggtacgcagATATCCTTCTCCTGGATGTGGCACCCCTTACCCTCGGTATCGAGACTGTCG
EST: TGCGGTTCAGGGAAGCATTCTCAGCGGCGAGGGCGGTGACGAAACCAAAG ATATCCTTCTCCTGGATGTGGCACCCCTTACCCTCGGTATCGAGACTGTCGEST: gi|29640637|gb|CB645646.1|CB645646
genomic: TGCGGTTCAGGGAAGCATTCTCAGCGGCGAGGGCGGTGACGAAACCAAAGgttcgacctt ... tggtacgcagATATCCTTCTCCTGGATGTGGCACCCCTTACCCTCGGTATCGAGACTGTCG
EST: TGCGGTTCAGGGAAGCATTCTCAGCGGCGAGGGCGGTGACGAAACCAAAG ATATCCTTCTCCTGGATGTGGCACCCCTTACCCTCGGTATCGAGACTGTCGEST: gi|58690929|gb|CK079616.1|CK079616
genomic: TGCGGTTCAGGGAAGCATTCTCAGCGGCGAGGGCGGTGACGAAACCAAAGgttcgacctt ... tggtacgcagATATCCTTCTCCTGGATGTGGCACCCCTTACCCTCGGTATCGAGACTGTCG
EST: TGCGGTTCAGGGAAGCATTCTCAGCGGCGAGGGCGGTGACGAAACCAAAG ATATCCTTCTCCTGGATGTGGCACCCCTTACCCTCGGTATCGAGACTGTCGEST: gi|2310033|gb|C26188.1|C26188
genomic: TGCGGTTCAGGGAAGCATTCTCAGCGGCGAGGGCGGTGACGAAACCAAAGgttcgacctt ... tggtacgcagATATCCTTCTCCTGGATGTGGCACCCCTTACCCTCGGTATCGAGACTGTCG
EST: TGCGGTTCAGGGAAGCATTCTCAGCGGCGAGGGCGGTGACGAAACCAAAG ATATCCTTCTCCTGGATGTEST: gi|58661511|gb|CK050191.1|CK050191
genomic: TGCGGTTCAGGGAAGCATTCTCAGCGGCGAGGGCGGTGACGAAACCAAAGgttcgacctt ... tggtacgcagATATCCTTCTCCTGGATGT
EST: TGCGGTTCAGGGAAGCATTCTCAGCGGCGAGGGCGGTGACGAAACCAAAG ATATCCTTCTCCTGGATGTGGCACCCCTTACCCTCGGTATCGAGACTGTCGEST: gi|55411112|gb|CV723488.1|CV723488
genomic: TGCGGTTCAGGGAAGCATTCTCAGCGGCGAGGGCGGTGACGAAACCAAAGgttcgacctt ... tggtacgcagATATCCTTCTCCTGGATGTGGCACCCCTTACCCTCGGTATCGAGACTGTCG
EST: TGCGGTTCAGGGAAGCATTCTCAGCGGCGAGGGCGGTGACGAAACCAAAG ATATCCTTCTCCTGGATGTGGCACCCCTTACCCTCGGTATCGAGACTGTCGEST: gi|29660696|gb|CB656971.1|CB656971
genomic: TGCGGTTCAGGGAAGCATTCTCAGCGGCGAGGGCGGTGACGAAACCAAAGgttcgacctt ... tggtacgcagATATCCTTCTCCTGGATGTGGCACCCCTTACCCTCGGTATCGAGACTGTCG
EST: TGCGGTTCAGGGAAGCATTCTCAGCGGCGAGGGCGGTGACGAAACCAAAG ATATCCTTCTCCTGGATGTGGCACCCCTTACCCTCGGTATCGAGACTGTCG
genomic: TGCGGTTCAGGGAAGCATTCTCAGCGGCGAGGGCGGTGACGAAACCAAAGgttcgacctt ... tggtacgcagATATCCTTCTCCTGGATGTGGCACCCCTTACCCTCGGTATCGAGACTGTCG
caactgcgatcatctgtcttgcatatacttatcgtgctttgattttggtacgcagATATCCTTCTCCTGGATGTGGCACCCCTTACCCTCGGTATCGAGACTGTCGGTGGAGTCATGACCAAGTTGATCCCCAGGAACACCGTCATCCCCACCAA
ctttgat putative branch site (score: 194)
atatacttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgaccttgatcacatacatagtcctttgggttggtaacaactgcgatcatctgtcttgcatatacttatcgtgctttgattttggtacgcagATATCCTTCTCCTGGATGTGGCACCCCTTACCCTCGGTATCGAGACTGTCGGTGGAGTCATGACCAAGTTGATCCCCAGGAACACCGTCATCCCCACCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG