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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgcactttgctttcaactctgatacaacagtataaccttagtccagttaatcaccatggaaatcttttgcaccacatcatattatcacatcatactttcacctattccagCGCATTCGATGGAAGAAGCTGAATTTCTATGCGATCGGATAGGAATTATCGCAAACGGTAGCTTGCAATGCATCGGGAACTCTAAAGAG

Basic information

species Oryza sativa
transcript LOC_Os02g01820.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g01820.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM5G886326_T01 (Zea mays), 3'ss of exon 1
---------------------------------------gtactgcactt-tgctttcaactctgatacaacagtataaccttagtccagttaatcaccatggaaatcttttgcacca-catcatattatcacatcatactttcacctattccagCGCATTCGATGGAAGAAGCTGAATTTCTATGCGATCGGATAGGAATTATCGCAAACGGTAGCTTGCAATGCATCGGGAACTCTAAAGAG
                                       |   |    || ||   |       | ||        |||     |    ||   |  |||| |  |||| | | | || |||  |   | ||   | | | |  |  | || ||||||||||||||||||| |||||  || | ||||| ||||| || || ||||| || ||||||||||| ||||| || | |||||| |||
gtaaatccatacccgccagtgtatatgggtgacccgatggggttatttttgtgtcgtgggtatgggtatggggtagtaatacccggtgggtatttacccattgccatctctagtaacaacatggtgaaaacattgcttgcatctatat-tttcagCGCATTCGATGGAAGAGGCTGACGTTTTGTGCGACCGGATCGGGATCATCGCGAATGGTAGCTTGCAGTGCATTGGAAGCTCTAAGGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggaaatcttttgcaccacatcatattatcacatcatactttcacctattccagCGCATTCGATGGAAGAAGCTGAATTTCTATGCGATCGGATAGGAATTATCGCAAACGGTAGCTTGCAATGCATCGGGAACTCTAAAGAG
                                       ctttcacctattcc  CT-rich tract
                    atcatattat  TA-rich tract