1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...attgattttttatagaatagattggttttttatggaacggagggagagtacgagtgagttgtaacatgactgacatacagtatatatgtatctgcaacagGGGTTCAAGAACGTGAAGAACATGGGAGGAGGCTACGCAGCGTGGCTCGACAATGGATTCCCCATAAACACTCCTCCTCATACAATGTATTAACGCTTTG
species | Oryza sativa |
transcript | LOC_Os02g01220.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCCAAAGCGGGAAGAGGTCGGAGCTAGCATGCGTTGATCTCCTTGAAGCA GGGTTCAAGAACGTGAAGAACATGGGAGGAGGCTACGCAGCGTGGCTCGACEST: gi|58593836|gb|CF992144.1|CF992144
genomic: GCCAAAGCGGGAAGAGGTCGGAGCTAGCATGCGTTGATCTCCTTGAAGCAgtaagtttga ... tctgcaacagGGGTTCAAGAACGTGAAGAACATGGGAGGAGGCTACGCAGCGTGGCTCGAC
EST: GCCAAAGCGGGAAGAGGTCGGAGCTAGCATGCGTTGATCTCCTTGAAGCG GGGTTCAAGAACGTGAAGAACATGGGAGGAGGCTACGCAGCGTGGCTCGACEST: gi|33666398|gb|CF297365.1|CF297365
genomic: GCCAAAGCGGGAAGAGGTCGGAGCTAGCATGCGTTGATCTCCTTGAAGCAgtaagtttga ... tctgcaacagGGGTTCAAGAACGTGAAGAACATGGGAGGAGGCTACGCAGCGTGGCTCGAC
EST: GCCAAAGCGGGAAGAGGTCGGAGCTAGCATGCGTTGATCTCCTTGAAGCA GGGTTCAAGAACGTGAAGAATATGGGAGGAGGCTACGCAGCGTGGCTCGACEST: gi|88289261|gb|CI553237.1|CI553237
genomic: GCCAAAGCGGGAAGAGGTCGGAGCTAGCATGCGTTGATCTCCTTGAAGCAgtaagtttga ... tctgcaacagGGGTTCAAGAACGTGAAGAACATGGGAGGAGGCTACGCAGCGTGGCTCGAC
EST: GCCAAAGCGGGAAGAGGTCGGAGCTAGCATGCGTTGATCTCCTTGAAGCA GGGTTCAAGAACGTGAAGAACATGGGAGGAGGCTACGCAGCGTGGCTCGACEST: gi|88456290|gb|CI560893.1|CI560893
genomic: GCCAAAGCGGGAAGAGGTCGGAGCTAGCATGCGTTGATCTCCTTGAAGCAgtaagtttga ... tctgcaacagGGGTTCAAGAACGTGAAGAACATGGGAGGAGGCTACGCAGCGTGGCTCGAC
EST: GCCAAAGCGGGAAGAGGTCGGAGCTAGCATGCGTTGATCTCCTTGAAGCA GGGTTCAAGAACGTGAAGAACATGGGAGGAGGCTACGCAGCGTGGCTCGACEST: gi|86525933|gb|CI166139.1|CI166139
genomic: GCCAAAGCGGGAAGAGGTCGGAGCTAGCATGCGTTGATCTCCTTGAAGCAgtaagtttga ... tctgcaacagGGGTTCAAGAACGTGAAGAACATGGGAGGAGGCTACGCAGCGTGGCTCGAC
EST: GCCAAAGCGGGAAGAGGTCGGAGCTAGCATGCGTTGATCTCCTTGAAGCA GGGTTCAAGAACGTGAAGAACATGGGAGGAGGCTACGCAGCGTGGCTCGACEST: gi|88409341|gb|CI559439.1|CI559439
genomic: GCCAAAGCGGGAAGAGGTCGGAGCTAGCATGCGTTGATCTCCTTGAAGCAgtaagtttga ... tctgcaacagGGGTTCAAGAACGTGAAGAACATGGGAGGAGGCTACGCAGCGTGGCTCGAC
EST: GCCAAAGCGGGAAGAGGTCGGAGCTAGCATGCGTTGATCTCCTTGAAGCA GGGTTCAAGAACGTGAAGAACATGGGAGGAGGCTACGCAGCGTGGCTCGACEST: gi|86547077|gb|CI187283.1|CI187283
genomic: GCCAAAGCGGGAAGAGGTCGGAGCTAGCATGCGTTGATCTCCTTGAAGCAgtaagtttga ... tctgcaacagGGGTTCAAGAACGTGAAGAACATGGGAGGAGGCTACGCAGCGTGGCTCGAC
EST: GCCAAAGCGGGAAGAGGTCGGAGCTAGCATGCGTTGATCTCCTTGAAGCA GGGTTCAAGAACGTGAAGAACATGGGAGGAGGCTACGCAGCGTGGCTCGACEST: gi|86545060|gb|CI185266.1|CI185266
genomic: GCCAAAGCGGGAAGAGGTCGGAGCTAGCATGCGTTGATCTCCTTGAAGCAgtaagtttga ... tctgcaacagGGGTTCAAGAACGTGAAGAACATGGGAGGAGGCTACGCAGCGTGGCTCGAC
EST: GCCAAAGCGGGAAGAGGTCGGAGCTAGCATGCGTTGATCTCCTTGAAGCA GGGTTCAAGAACGTGAAGAACATGGGAGGAGGCTACGCAGCGTGGCTCGACEST: gi|88202886|gb|CI200738.1|CI200738
genomic: GCCAAAGCGGGAAGAGGTCGGAGCTAGCATGCGTTGATCTCCTTGAAGCAgtaagtttga ... tctgcaacagGGGTTCAAGAACGTGAAGAACATGGGAGGAGGCTACGCAGCGTGGCTCGAC
EST: GCCAAAGCGGGAAGAGGTCGGAGCTAGCATGCGTTGATCTCCTTGAAGCA GGGTTCAAGAACGTGAAGAACATGGGAGGAGGCTACGCAGCGTGGCTCGACEST: gi|88998270|gb|CI038155.1|CI038155
genomic: GCCAAAGCGGGAAGAGGTCGGAGCTAGCATGCGTTGATCTCCTTGAAGCAgtaagtttga ... tctgcaacagGGGTTCAAGAACGTGAAGAACATGGGAGGAGGCTACGCAGCGTGGCTCGAC
EST: GCCAAAGCGGGAAGAGGTCGGAGCTAGCATGCGTTGATCTCCTTGAAGCA GGGTTCAAGAACGTGAAGAACATGGGAGGAGGCTACGCAGCGTGGCTCGACEST: gi|88977408|gb|CI025145.1|CI025145
genomic: GCCAAAGCGGGAAGAGGTCGGAGCTAGCATGCGTTGATCTCCTTGAAGCAgtaagtttga ... tctgcaacagGGGTTCAAGAACGTGAAGAACATGGGAGGAGGCTACGCAGCGTGGCTCGAC
EST: GCCAAAGCGGGAAGAGGTCGGAGCTAGCATGCGTTGATCTCCTTGAAGCA GGGTTCAAGAACGTGAAGAACATGGGAGGAGGCTACGCAGCGTGGCTCGACEST: gi|88517358|gb|CI445012.1|CI445012
genomic: GCCAAAGCGGGAAGAGGTCGGAGCTAGCATGCGTTGATCTCCTTGAAGCAgtaagtttga ... tctgcaacagGGGTTCAAGAACGTGAAGAACATGGGAGGAGGCTACGCAGCGTGGCTCGAC
EST: GCCAAAGCGGGAAGAGGTCGGAGCTAGCATGCGTTGATCTCCTTGAAGCA GGGTTCAAGAACGTGAAGAACATGGGAGGAGGCTACGCAGCGTGGCTCGACEST: gi|88239644|gb|CI238806.1|CI238806
genomic: GCCAAAGCGGGAAGAGGTCGGAGCTAGCATGCGTTGATCTCCTTGAAGCAgtaagtttga ... tctgcaacagGGGTTCAAGAACGTGAAGAACATGGGAGGAGGCTACGCAGCGTGGCTCGAC
EST: GCCAAAGCGGGAAGAGGTCGGAGCTAGCATGCGTTGATCTCCTTGAAGCA GGGTTCAAGAACGTGAAGAACATGGGAGGAGGCTACGCAGCGTGGCTCGACEST: gi|88438597|gb|CI543701.1|CI543701
genomic: GCCAAAGCGGGAAGAGGTCGGAGCTAGCATGCGTTGATCTCCTTGAAGCAgtaagtttga ... tctgcaacagGGGTTCAAGAACGTGAAGAACATGGGAGGAGGCTACGCAGCGTGGCTCGAC
EST: GAAGAGGTCGGAGCTAGCATGCGTTGATCTCCTTGAAGCA GGGTTCAAGAACGTGAAGAACATGGGANGAGGGTACGCAGCTG-GGCTCGAEST: gi|88201999|gb|CI202354.1|CI202354
genomic: GAAGAGGTCGGAGCTAGCATGCGTTGATCTCCTTGAAGCAgtaagtttga ... tctgcaacagGGGTTCAAGAACGTGAAGAACATGGGAGGAGGCTACGCAGC-GTGGCTCGA
EST: GCCAAAGCGGGAAGAGGTCGGAGCTAGCATGCGTTGATCTCCTTGAAGCA GGGTTCAAGAACGTGAAGAACATGGGAGGAGGCTACGCAGCGTGGCTCGACEST: gi|88201185|gb|CI201540.1|CI201540
genomic: GCCAAAGCGGGAAGAGGTCGGAGCTAGCATGCGTTGATCTCCTTGAAGCAgtaagtttga ... tctgcaacagGGGTTCAAGAACGTGAAGAACATGGGAGGAGGCTACGCAGCGTGGCTCGAC
EST: GCC-AAGCGGGAAGAGGTCGGAGCTAGCATGCGTTGATCTCCTTGAAGCA GGGTTCAAGAACGTGAAGAACATGGGAGGAGGCTACGCAGCGTGGCTCGACEST: gi|88200758|gb|CI200608.1|CI200608
genomic: GCCAAAGCGGGAAGAGGTCGGAGCTAGCATGCGTTGATCTCCTTGAAGCAgtaagtttga ... tctgcaacagGGGTTCAAGAACGTGAAGAACATGGGAGGAGGCTACGCAGCGTGGCTCGAC
EST: GCCAAAGCGGGAAGAGGTCGGAGCTAGCATGCGTTGATCTCCTTGAAGCA GGGTTCAAGAACGTGAAGAACATGGGAGGAGGCTACGCAGCGTGGCTCGACEST: gi|87034626|gb|CI189250.1|CI189250
genomic: GCCAAAGCGGGAAGAGGTCGGAGCTAGCATGCGTTGATCTCCTTGAAGCAgtaagtttga ... tctgcaacagGGGTTCAAGAACGTGAAGAACATGGGAGGAGGCTACGCAGCGTGGCTCGAC
EST: GCCAAAGCGGGAAGAGGTCGGAGCTAGCATGCGTTGATCTCCTTGAAGCA GGGTTCAAGAACGTGAAGAACATGGGAGGAGGCTACGCAGCGTGGCTCGACEST: gi|88322931|gb|CI548025.1|CI548025
genomic: GCCAAAGCGGGAAGAGGTCGGAGCTAGCATGCGTTGATCTCCTTGAAGCAgtaagtttga ... tctgcaacagGGGTTCAAGAACGTGAAGAACATGGGAGGAGGCTACGCAGCGTGGCTCGAC
EST: GCCAAAGCGGGAAGAGGTCGGAGCTAGCATGCGTTGATCTCCTTGAAGCA GGGTTCAAGAACGTGAAGAACATGGGAGGAGGCTACGCAGCGTGGCTCGAC
genomic: GCCAAAGCGGGAAGAGGTCGGAGCTAGCATGCGTTGATCTCCTTGAAGCAgtaagtttga ... tctgcaacagGGGTTCAAGAACGTGAAGAACATGGGAGGAGGCTACGCAGCGTGGCTCGAC
gagtacgagtgagttgtaacatgactgacatacagtatatatgtatctgcaacagGGGTTCAAGAACGTGAAGAACATGGGAGGAGGCTACGCAGCGTGGCTCGACAATGGATTCCCCATAAACACTCCTCCTCATACAATGTATTAACGCTTTG
gactgac putative branch site (score: 106)
tatatatgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgattttttatagaatagattggttttttatggaacggagggagagtacgagtgagttgtaacatgactgacatacagtatatatgtatctgcaacagGGGTTCAAGAACGTGAAGAACATGGGAGGAGGCTACGCAGCGTGGCTCGACAATGGATTCCCCATAAACACTCCTCCTCATACAATGTATTAACGCTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - -agaataga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atatgta