1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagtatgatttctttgtatcaacaaattaggggcttactgcatcatagtaataggatcaaacggtgtgcatgcagGCTGAAGATAATGCTGCCAAGGGTAAGCTACGTGTGTCTGCTGAGGACTACAAGGCAGCCCTAGCAATGGATCCAGATCATACTTCTTACAATGTACATC
species | Oryza sativa |
transcript | LOC_Os01g74580.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGAAGAAAGCATATTTTGGGTTGAAAAATCTTGTGAAGAAGACTAAGAGT GCTGAAGATAATGCTGCCAAGGGTAAGCTACGTGTGTCTGCTGAGGACTACEST: gi|58597523|gb|CK008051.1|CK008051
genomic: TGAAGAAAGCATATTTTGGGTTGAAAAATCTTCTGAAGAAGACTAAGAGTgtgagtatga ... gtgcatgcagGCTGAAGATAATGCTGCCAAGGGTAAGCTACGTGTGTCTGCTGAGGACTAC
EST: TGAAGAAAGCATATTTTGGGTTGAAAAATCTTCTGAAGAAGACTAAGAGT GCTGAAGATAATGCTGCCAAGGGTAAGCTACGTGTGTCTGCTGAGGACTACEST: gi|58681128|gb|CK069815.1|CK069815
genomic: TGAAGAAAGCATATTTTGGGTTGAAAAATCTTCTGAAGAAGACTAAGAGTgtgagtatga ... gtgcatgcagGCTGAAGATAATGCTGCCAAGGGTAAGCTACGTGTGTCTGCTGAGGACTAC
EST: TGAAGAAAGCATATTTTGGGTTGAAAAATCTTGTGAAGAAGACTAAGAGT GCTGAAGATAATGCTGCCAAGGGTAAGCTACGTGTGTCTGCTGAGGACTAC
genomic: TGAAGAAAGCATATTTTGGGTTGAAAAATCTTCTGAAGAAGACTAAGAGTgtgagtatga ... gtgcatgcagGCTGAAGATAATGCTGCCAAGGGTAAGCTACGTGTGTCTGCTGAGGACTAC
aacaaattaggggcttactgcatcatagtaataggatcaaacggtgtgcatgcagGCTGAAGATAATGCTGCCAAGGGTAAGCTACGTGTGTCTGCTGAGGACTACAAGGCAGCCCTAGCAATGGATCCAGATCATACTTCTTACAATGTACATC
ggcttac putative branch site (score: 23)
atagtaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtatgatttctttgtatcaacaaattaggggcttactgcatcatagtaataggatcaaacggtgtgcatgcagGCTGAAGATAATGCTGCCAAGGGTAAGCTACGTGTGTCTGCTGAGGACTACAAGGCAGCCCTAGCAATGGATCCAGATCATACTTCTTACAATGTACATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA