1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagctgatctccatctgaataactaaccttaaattgggagtacactagtattaatccatcagatgcatgtattgatcttaccagGATTTGGCATGGTTGCTGGGTTTCTGGAAGAGCAGCTCTACAGGTGGCTCCGGGCTGCAGAGCTGACTTGTGATCGAGCGGCTCTTCTTGTAGTGCAGGA
species | Oryza sativa |
transcript | LOC_Os01g73910.6 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTGGCTTACATTTGCCAACATACTGACAATGGGAGCATACTCTGTCCCTG GATTTGGCATGGTTGCTGGGTTTCTGGAAGAGCAGCTCTACAGGTGGCTCCEST: gi|58687641|gb|CK076328.1|CK076328
genomic: GTGGCTTACATTTGCCAACATACTGACAATGGGAGCATACTCTGTCCCTGgtaagctgat ... atcttaccagGATTTGGCATGGTTGCTGGGTTTCTGGAAGAGCAGCTCTACAGGTGGCTCC
EST: GTGGCTTACATTTGCCAACATACTGACAATGGGAGCATACTCTGTCCCTG GATTTGGCATGGTTGCTGGGTTTCTGGAAGAGCAGCTCTACAGGTGGCTCCEST: gi|86601574|gb|CI253902.1|CI253902
genomic: GTGGCTTACATTTGCCAACATACTGACAATGGGAGCATACTCTGTCCCTGgtaagctgat ... atcttaccagGATTTGGCATGGTTGCTGGGTTTCTGGAAGAGCAGCTCTACAGGTGGCTCC
EST: GTGGCTTACATTTGCCAACATACTGACAATGGGAGCATACTCTGTCCCTG GATTTGGCATGGTTGCTGGGTTTCTGGAAGAGCAGCTCTACAGGTGGCTCCEST: gi|313079079|gb|HO213970.1|HO213970
genomic: GTGGCTTACATTTGCCAACATACTGACAATGGGAGCATACTCTGTCCCTGgtaagctgat ... atcttaccagGATTTGGCATGGTTGCTGGGTTTCTGGAAGAGCAGCTCTACAGGTGGCTCC
EST: GTGGCTTACATTTGCCAACATACTGACAATGGGAGCATACTCTGTCCCTG GATTTGGCATGGTTGCTGGGTTTCTGGAAGAGCAGCTCTACAGGTGGCTCCEST: gi|58690986|gb|CK079673.1|CK079673
genomic: GTGGCTTACATTTGCCAACATACTGACAATGGGAGCATACTCTGTCCCTGgtaagctgat ... atcttaccagGATTTGGCATGGTTGCTGGGTTTCTGGAAGAGCAGCTCTACAGGTGGCTCC
EST: CAACATACTGACAATGGGAGCATACTCTGTCCCTG GATTTGGCATGGTTGCTGGGTTTCTGGAAGAGCAGCTCTACAGGTGGCTCCEST: gi|29624826|gb|CB629837.1|CB629837
genomic: CAACATACTGACAATGGGAGCATACTCTGTCCCTGgtaagctgat ... atcttaccagGATTTGGCATGGTTGCTGGGTTTCTGGAAGAGCAGCTCTACAGGTGGCTCC
EST: GTGGCTTACATTTGCCAACATACTGACAATGGGAGCATACTCTGTCCCTG GATTTGGCATGGTTGCTGGGTTTCTGGAAGAGCAGCTCTACAGGTGGCTCCEST: gi|22305824|gb|BQ907046.1|BQ907046
genomic: GTGGCTTACATTTGCCAACATACTGACAATGGGAGCATACTCTGTCCCTGgtaagctgat ... atcttaccagGATTTGGCATGGTTGCTGGGTTTCTGGAAGAGCAGCTCTACAGGTGGCTCC
EST: GTGGCTTACATTTGCCAACATACTGACAATGGGAGCATACTCTGTCCCTG GATTTGGCATGGTTGCTGGGTTTCTGGAAGAGCAGCTCTACAGGTGGCTCCEST: gi|29683738|gb|CB680013.1|CB680013
genomic: GTGGCTTACATTTGCCAACATACTGACAATGGGAGCATACTCTGTCCCTGgtaagctgat ... atcttaccagGATTTGGCATGGTTGCTGGGTTTCTGGAAGAGCAGCTCTACAGGTGGCTCC
EST: GTGGCTTACATTTGCCAACATACTGACAATGGGAGCATACTCTGTCCCTG GATTTGGCATGGTTGCTGGGTTTCTGGAAGAGCAGCTCTACAGGTGGCTCCEST: gi|29624825|gb|CB629836.1|CB629836
genomic: GTGGCTTACATTTGCCAACATACTGACAATGGGAGCATACTCTGTCCCTGgtaagctgat ... atcttaccagGATTTGGCATGGTTGCTGGGTTTCTGGAAGAGCAGCTCTACAGGTGGCTCC
EST: GTGGCTTACATTTGCCAACATACTGACAATGGGAGCATACTCTGTCCCTG GATTTGGCATGGTTGCTGGGTTTCTGGAAGAGCAGCTCTACAGGTGGCTCC
genomic: GTGGCTTACATTTGCCAACATACTGACAATGGGAGCATACTCTGTCCCTGgtaagctgat ... atcttaccagGATTTGGCATGGTTGCTGGGTTTCTGGAAGAGCAGCTCTACAGGTGGCTCC
taaattgggagtacactagtattaatccatcagatgcatgtattgatcttaccagGATTTGGCATGGTTGCTGGGTTTCTGGAAGAGCAGCTCTACAGGTGGCTCCGGGCTGCAGAGCTGACTTGTGATCGAGCGGCTCTTCTTGTAGTGCAGGA
tcttacc CT-rich tract
tagtattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctgatctccatctgaataactaaccttaaattgggagtacactagtattaatccatcagatgcatgtattgatcttaccagGATTTGGCATGGTTGCTGGGTTTCTGGAAGAGCAGCTCTACAGGTGGCTCCGGGCTGCAGAGCTGACTTGTGATCGAGCGGCTCTTCTTGTAGTGCAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA