1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atgggcgaaaccagaacgatatttacttttgaaaattaacttcaggccctagtgttctttacaaaaataataatgaaataaatcgatgttccttttgcagTTCCAGAGCAAGCTATGACCTGGGGTGTGGAGGAGGTGCGGAGTGATCGATATTTGTCCATAAGCTGCATTGAGTGCGAAATTTGTTCTTTTGTTGCATG
species | Oryza sativa |
transcript | LOC_Os01g73840.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCTTGAATGTTCTACTCCAGTCGTGAAGCTCACAAATTTTAGAAAGAAAG TTCCAGAGCAAGCTATGACCTGGGGTGTGGAGGAGGTGCGGAGTGATCGATEST: gi|9866025|gb|AU101775.1|AU101775
genomic: CCTTGAATGTTCTACTCCAGTCGTGAAGCTCACAAATTTTAGAAAGAAAGgtaatataca ... ccttttgcagTTCCAGAGCAAGCTATGACCTGGGGTGTGGAGGAGGTGCGGAGTGATCGAT
EST: CCTTGAATGTTCTNCTCCAGTCGTGAAGCTCACAAATTTTAGAAAGAAAN TTCCAGAGCAAGCTATGACCTGGGGTNTGGAGGAGGTGCGGAGTGATCGATEST: gi|88213704|gb|CI213553.1|CI213553
genomic: CCTTGAATGTTCTACTCCAGTCGTGAAGCTCACAAATTTTAGAAAGAAAGgtaatataca ... ccttttgcagTTCCAGAGCAAGCTATGACCTGGGGTGTGGAGGAGGTGCGGAGTGATCGAT
EST: CCTTGAATGTTCTACTCCAGTCGTGAAGCTCACAAATTTTAGAAAGAAAG TTCCAGAGCAAGCTATGACCTGGGGTGTGGAGGAGGTGCGGAGTGATCGATEST: gi|701551|gb|D47842.1|D47842
genomic: CCTTGAATGTTCTACTCCAGTCGTGAAGCTCACAAATTTTAGAAAGAAAGgtaatataca ... ccttttgcagTTCCAGAGCAAGCTATGACCTGGGGTGTGGAGGAGGTGCGGAGTGATCGAT
EST: CCTTGAATGTTCTACTCCAGTCGTGAAGCTCACAAATTTTAGAAAGAAAG TTCCAGAGCAAGCTATGACCTGGGGTGTGGAGGAGGTGCGGAGTGATCGAT
genomic: CCTTGAATGTTCTACTCCAGTCGTGAAGCTCACAAATTTTAGAAAGAAAGgtaatataca ... ccttttgcagTTCCAGAGCAAGCTATGACCTGGGGTGTGGAGGAGGTGCGGAGTGATCGAT
gccctagtgttctttacaaaaataataatgaaataaatcgatgttccttttgcagTTCCAGAGCAAGCTATGACCTGGGGTGTGGAGGAGGTGCGGAGTGATCGATATTTGTCCATAAGCTGCATTGAGTGCGAAATTTGTTCTTTTGTTGCATG
tgttcctttt CT-rich tract
tgttctttacaaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgggcgaaaccagaacgatatttacttttgaaaattaacttcaggccctagtgttctttacaaaaataataatgaaataaatcgatgttccttttgcagTTCCAGAGCAAGCTATGACCTGGGGTGTGGAGGAGGTGCGGAGTGATCGATATTTGTCCATAAGCTGCATTGAGTGCGAAATTTGTTCTTTTGTTGCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - -aaaccag
- - - - - - - - - - - - - - - - - - - - - caggccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa