1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gagtttgaacttgtctttctataatgatttctcaaataaacatcattgtctcattttgtttattccatcttacaatggctttttttctttcattttgcagTCAATGCAGAGGTAGTACTTAAGGCAACAAATGTTGACGGTGTGTACGACGCAGACCCCAAGCGTAACCCAAATGCCCGCCTTCTTGAGGCTGTGAGCTA
species | Oryza sativa |
transcript | LOC_Os01g73450.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAACCCATTCTTTACAACTGATACAGCTGCTGCTCTTCGTTGTGCAGAAA TCAATGCAGAGGTAGTACTTAAGGCAACAAATGTTGACGGTGTGTACGACGEST: gi|29686224|gb|CB682499.1|CB682499
genomic: GAACCCATTCTTTACAACTGATACAGCTGCTGCTCTTCGTTGTGCAGAAAgtgagtttat ... cattttgcagTCAATGCAGAGGTAGTACTTAAGGCAACAAATGTTGACGGTGTGTACGACG
EST: GAACCCATTCTTTACAACTGATACAGCTGCTGCTCTTCGTTGTGCAGAAA TCAATGCAGAGGTAGTACTTAAGGGCA-CAAATGTTGACGGTGTGTEST: gi|87026955|gb|CI259608.1|CI259608
genomic: GAACCCATTCTTTACAACTGATACAGCTGCTGCTCTTCGTTGTGCAGAAAgtgagtttat ... cattttgcagTCAATGCAGAGGTAGTACTTAAGG-CAACAAATGTTGACGGTGTGT
EST: GAACCCATTCTTTACAACTGATACAGCTGCTGCTCTTCGTTGTGCAGAAA TCAATGCAGAGGTAGTACTTAAGGCAACAAATGTTGACGGTGTGTACGACGEST: gi|27547309|gb|CA765514.2|CA765514
genomic: GAACCCATTCTTTACAACTGATACAGCTGCTGCTCTTCGTTGTGCAGAAAgtgagtttat ... cattttgcagTCAATGCAGAGGTAGTACTTAAGGCAACAAATGTTGACGGTGTGTACGACG
EST: GAACCCATTCTTTACAACTGATACAGCTGCTGCTCTTCGTTGTGCAGAAA TCAATGCAGAGGTAGTACTTAAGGCAACAAATGTTGACGGTGTGTACGACGEST: gi|33801435|gb|CF326589.1|CF326589
genomic: GAACCCATTCTTTACAACTGATACAGCTGCTGCTCTTCGTTGTGCAGAAAgtgagtttat ... cattttgcagTCAATGCAGAGGTAGTACTTAAGGCAACAAATGTTGACGGTGTGTACGACG
EST: GAACCCATTCTTTACAACTGATACAGCTGCTGCTCTTCGTTGTGCAGAAA TCAATGCAGAGGTAGTACTTAAGGCAACAAATGTTGACGGTGTGTACGACGEST: gi|87006935|gb|CI275243.1|CI275243
genomic: GAACCCATTCTTTACAACTGATACAGCTGCTGCTCTTCGTTGTGCAGAAAgtgagtttat ... cattttgcagTCAATGCAGAGGTAGTACTTAAGGCAACAAATGTTGACGGTGTGTACGACG
EST: GAACCCATTCTTTACAACTGATACAGCTGCTGCTCTTCGTTGTGCAGAAA TCAATGCAGAGGTAGTACTTAAGGCAACAAATGTTGACGGTGTGTACGACGEST: gi|29663412|gb|CB659687.1|CB659687
genomic: GAACCCATTCTTTACAACTGATACAGCTGCTGCTCTTCGTTGTGCAGAAAgtgagtttat ... cattttgcagTCAATGCAGAGGTAGTACTTAAGGCAACAAATGTTGACGGTGTGTACGACG
EST: GAACCCATTCTTTACAACTGATACAGCTGCTGCTCTTCGTTGTGCAGAAA TCAATGCAGAGGTAGTACTTAAGGCAACAAATGTTGACGGTGTGTACGACGEST: gi|218484425|gb|FG955570.1|FG955570
genomic: GAACCCATTCTTTACAACTGATACAGCTGCTGCTCTTCGTTGTGCAGAAAgtgagtttat ... cattttgcagTCAATGCAGAGGTAGTACTTAAGGCAACAAATGTTGACGGTGTGTACGACG
EST: GAACCCATTCTTTACAACTGATACAGCTGCTGCTCTTCGTTGTGCAGAAA TCAATGCAGAGGTAGTACTTAAGGCAACAAATGTTGACGGTGTGTACGACG
genomic: GAACCCATTCTTTACAACTGATACAGCTGCTGCTCTTCGTTGTGCAGAAAgtgagtttat ... cattttgcagTCAATGCAGAGGTAGTACTTAAGGCAACAAATGTTGACGGTGTGTACGACG
ttgtctcattttgtttattccatcttacaatggctttttttctttcattttgcagTCAATGCAGAGGTAGTACTTAAGGCAACAAATGTTGACGGTGTGTACGACGCAGACCCCAAGCGTAACCCAAATGCCCGCCTTCTTGAGGCTGTGAGCTA
atcttac putative branch site (score: 49)
ctttttttctttcatt putative PPT
tttttttctttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagtttgaacttgtctttctataatgatttctcaaataaacatcattgtctcattttgtttattccatcttacaatggctttttttctttcattttgcagTCAATGCAGAGGTAGTACTTAAGGCAACAAATGTTGACGGTGTGTACGACGCAGACCCCAAGCGTAACCCAAATGCCCGCCTTCTTGAGGCTGTGAGCTA
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