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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtggtgtaatctatgcattttttgtatggactatctatgtggcttgctgcttgctgataaattttcactatgcagCGATTGGGCATATTTCACATAGCAAAAAG

Basic information

species Oryza sativa
transcript LOC_Os01g72870.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88433475|gb|CI594289.1|CI594289
EST:     CTTTGTTGAAGAGCTCTATGAGAACCTCGGTGGGCAAGCATCTATTACAG                         GGATTGGGCATATTTCACATAGC
genomic: CTTTGTTGAAGAGCTCTATGAGAACCTCGGTGGGCAAGCATCTATTACAGgtaagtgtgg ... cactatgcagCGATTGGGCATATTTCACATAGC
EST: gi|27576528|gb|CA999222.1|CA999222
EST:     CTTTGTTGAAGAGCTCTATGAGAACCTCGGTGGGCAAGCATCTATTACAG                         CGATTGGGCATATTTCACATAGCAAAAAG
genomic: CTTTGTTGAAGAGCTCTATGAGAACCTCGGTGGGCAAGCATCTATTACAGgtaagtgtgg ... cactatgcagCGATTGGGCATATTTCACATAGCAAAAAG
EST: gi|58677445|gb|CK066132.1|CK066132
EST:     CTTTGTTGAAGAGCTCTATGAGAACCTCGGTGGGCAAGCATCTATTACAG                         CGATTGGGCATATTTCACATAGCAAAAAG
genomic: CTTTGTTGAAGAGCTCTATGAGAACCTCGGTGGGCAAGCATCTATTACAGgtaagtgtgg ... cactatgcagCGATTGGGCATATTTCACATAGCAAAAAG
EST: gi|163918268|gb|EG713182.1|EG713182
EST:     CTTTGTTGAAGAGCTCTATGAGAACCTCGGTGGGCAAGCATCTATTACAG                         CGATTGGGCATATTTCACATAGCAAAAAGGATG
genomic: CTTTGTTGAAGAGCTCTATGAGAACCTCGGTGGGCAAGCATCTATTACAGgtaagtgtgg ... cactatgcagCGATTGGGCATATTTCACATAGCAAAAAGGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtatggactatctatgtggcttgctgcttgctgataaattttcactatgcagCGATTGGGCATATTTCACATAGCAAAAAG
                               tgctgat  putative branch site (score: 3)
                                         ttttcact  putative PPT
                                    ataaattttcactat  TA-rich tract