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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttaatcctgctgtccctcaggttgcagatatctgaatgagcattgacagacggtagtgtggcagtgattaactgacgatgcatgcagGTTGAGGAGACAAAGAATGCAGACCGGAGCGGCCCAATTGGGATCATCACCTCGGTTCTTTTCGCGACGGTGTTTGGTTGGATTTACCTGTTGGCTCTGA

Basic information

species Oryza sativa
transcript LOC_Os01g71700.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|112786951|gb|EE591760.1|EE591760
EST:     TGCTGATGAGCCAGTACTCTGTTATCGGCTACGATACATCTGCTCACATG                         GTTGAGGAGACAAAGAATGCAGACCGGAGCGGCCCAATTGGGATCATCACC
genomic: TGCTGATGAGCCAGTACTCTGTTATCGGCTACGATACATCTGCTCACATGgtaagttaat ... atgcatgcagGTTGAGGAGACAAAGAATGCAGACCGGAGCGGCCCAATTGGGATCATCACC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaatgagcattgacagacggtagtgtggcagtgattaactgacgatgcatgcagGTTGAGGAGACAAAGAATGCAGACCGGAGCGGCCCAATTGGGATCATCACCTCGGTTCTTTTCGCGACGGTGTTTGGTTGGATTTACCTGTTGGCTCTGA
                                     aactgac  putative branch site (score: 2)
                                tgattaa  TA-rich tract