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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcttagctccttacatttacctttttttttggggggggggtcaaaaacaagtctcagtttttttttatgaactcaagttgccatttagctgctcctgtgtacctttctagGCAATGCAAAGTGGGAACCTTAACCTTCCAGACATGGCAGAAGATTCTTCAAATGTAATAGTATATCAG

Basic information

species Oryza sativa
transcript LOC_Os01g69210.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g69210.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G126468_T01 (Zea mays), 3'ss of exon 5
gtatgtcttagctccttacatttacctttttttttgggggggg-ggtcaaaaacaagtctcagtttttttttatgaactcaagttgccatttagctgctcctgtgtacct--ttctagGCAATGCAAAGTGGGAACCTTAACCTTCCAGACATGGCAGAAGATTCTTCAAATGTAATAGTATATCAG
                   | ||||  ||     ||| |     ||  |||||| ||      || | ||| || || | |  || |||| ||||| ||  | || |  |   ||||||||||||||  ||| ||||||||||| ||||||||  | ||||||||||||||| |||| || ||||||
-----------------caacttacaattcagaatggagtatttgggaaaaaaccagagcattttgtatttcattaagt-acctttccatgtagctactaatatggatttatctctagGCAATGCAATCTGGAAACCTTAACCTACCAGACATTACTGAAGATTCTTCAAATATAATGGTCTATCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtttttttttatgaactcaagttgccatttagctgctcctgtgtacctttctagGCAATGCAAAGTGGGAACCTTAACCTTCCAGACATGGCAGAAGATTCTTCAAATGTAATAGTATATCAG
                                            tacctttct  CT-rich tract
     ttttttatgaa  TA-rich tract