1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tttattttttgaaagtgaaaagctataacattggaatccactcttacaccaattgctggaatcatactaaagttgattttttgtgattttgcttttcaagGGCCAAATGATGCCTGTTTCATCTTCTGAGAGTCGACTGCAGTCCCCAGGGGCTCAACAAACCTATGGAACTTCTCAGCAAGTTGATGCCAGTGCAGGCA
species | Oryza sativa |
transcript | LOC_Os01g68860.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCTGGAACTCATATACT GGCCAAATGATGCCTGTTTCATCTTCTGAGAGTCGACTGCAGTCCCCAGGGEST: gi|38476016|gb|CF960149.1|CF960149
genomic: GCTGGAACTCATATACTgtaagatcat ... gcttttcaagGGCCAAATGATGCCTGTTTCATCTTCTGAGAGTCGACTGCAGTCCCCAGGG
EST: TGATGGTACCGCAAGGTCTTGTTCAAGTACCCAGCTGGAATTCATATACT GGCCAAATGATGCCTGTTTCATCTTCTGAGAGTCGACTGCAGTCCCCAGGGEST: gi|218503721|gb|FG969763.1|FG969763
genomic: TGATTGTACCGCAAGGTCTTGTTCAAGTACCAAGCTGGAACTCATATACTgtaagatcat ... gcttttcaagGGCCAAATGATGCCTGTTTCATCTTCTGAGAGTCGACTGCAGTCCCCAGGG
EST: TGATTGTACCGCAAGGTCTTGTTCAAGTACCAAGCTGGAACTCATATACT GGCCAAATGATGCCTGTTTCATCTTCTGAGAGTCGACTGCAGTCCCCAGGGEST: gi|29658444|gb|CB654719.1|CB654719
genomic: TGATTGTACCGCAAGGTCTTGTTCAAGTACCAAGCTGGAACTCATATACTgtaagatcat ... gcttttcaagGGCCAAATGATGCCTGTTTCATCTTCTGAGAGTCGACTGCAGTCCCCAGGG
EST: TGATTGTACCGCAAGGTCTTGTTCAAGTACCAAGCTGGAACTCATATACT GGCCAAATGATGCCTGTTTCATCTTCTGAGAGTCGACTGCAGTCCCCAGGG
genomic: TGATTGTACCGCAAGGTCTTGTTCAAGTACCAAGCTGGAACTCATATACTgtaagatcat ... gcttttcaagGGCCAAATGATGCCTGTTTCATCTTCTGAGAGTCGACTGCAGTCCCCAGGG
acaccaattgctggaatcatactaaagttgattttttgtgattttgcttttcaagGGCCAAATGATGCCTGTTTCATCTTCTGAGAGTCGACTGCAGTCCCCAGGGGCTCAACAAACCTATGGAACTTCTCAGCAAGTTGATGCCAGTGCAGGCA
ttttgcttttc CT-rich tract
taaagttgatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttattttttgaaagtgaaaagctataacattggaatccactcttacaccaattgctggaatcatactaaagttgattttttgtgattttgcttttcaagGGCCAAATGATGCCTGTTTCATCTTCTGAGAGTCGACTGCAGTCCCCAGGGGCTCAACAAACCTATGGAACTTCTCAGCAAGTTGATGCCAGTGCAGGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG