1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tcggaaaatgtgactaacaaaaaacgaggaagttgtagtttggagttgaagttttctcataatttgtatagttttcttaccaactccaatttttcaacagCTGGCACTTGAGTCTGTCAGAACGGAATATGCTAATGCCCAGCTAGAATGCAATGCTGCAGATGAGAGGGCCAAAGTTCTTGCAGCAGAAGTCATTCTAC
species | Oryza sativa |
transcript | LOC_Os01g68380.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACCTGACATCTGACATGGAGAGATTGCAGAACGAAATTCAAGCTCAACTG CTGGCACTTGAGTCTGTCAGAACGGAATATGCTAATGCCCAGCTAGAATGCEST: gi|29668085|gb|CB664360.1|CB664360
genomic: ACCTGACATCTGACATGGAGAGATTGCAGAACGAAATTCAAGCTCAACTGgttaggctta ... ttttcaacagCTGGCACTTGAGTCTGTCAGAACGGAATATGCTAATGCCCAGCTAGAATGC
EST: ACCTGACATCTGACATGGAGAGATTGCAGAACGAAATTCAAGCTCAACTG CTGGCACTTGAGTCTGTCAGAACGGAATATGCTAATGCCCAGCTAGAATGCEST: gi|58687404|gb|CK076091.1|CK076091
genomic: ACCTGACATCTGACATGGAGAGATTGCAGAACGAAATTCAAGCTCAACTGgttaggctta ... ttttcaacagCTGGCACTTGAGTCTGTCAGAACGGAATATGCTAATGCCCAGCTAGAATGC
EST: ACCTGACATCTGACATGGAGAGATTGCAGAACGAAATTCAAGCTCAATTG CTGGCACTTGAGTCTGTCAGAACGGAATATGCTAATGCCCAGCTAGAATGCEST: gi|426257|gb|D22118.1|D22118
genomic: ACCTGACATCTGACATGGAGAGATTGCAGAACGAAATTCAAGCTCAACTGgttaggctta ... ttttcaacagCTGGCACTTGAGTCTGTCAGAACGGAATATGCTAATGCCCAGCTAGAATGC
EST: ACCTGACATCTGACATGGAGAGATTGCAGAACGAAATTCAAGCTCAACTG CTGGCACTTGAGTCTGTCAGAACGGAATATGCTAATGCCCAGCTAGAATGCEST: gi|125863358|gb|EL586677.1|EL586677
genomic: ACCTGACATCTGACATGGAGAGATTGCAGAACGAAATTCAAGCTCAACTGgttaggctta ... ttttcaacagCTGGCACTTGAGTCTGTCAGAACGGAATATGCTAATGCCCAGCTAGAATGC
EST: ACCTGACATCTGACATGGAGAGATTGCAGAACGAAATTCAAGCTCAACTG CTGGCACTTGAGTCTGTCAGAACGGAATATGCTAATGCCCAGCTAGAATGCEST: gi|58681164|gb|CK069851.1|CK069851
genomic: ACCTGACATCTGACATGGAGAGATTGCAGAACGAAATTCAAGCTCAACTGgttaggctta ... ttttcaacagCTGGCACTTGAGTCTGTCAGAACGGAATATGCTAATGCCCAGCTAGAATGC
EST: ACCTGACATCTGACATGGAGAGATTGCAGAACGAAATTCAAGCTCAACTG CTGGCACTTGAGTCTGTCAGAACGGAATATGCTAATGCCCAGCTAGAATGCEST: gi|29668122|gb|CB664397.1|CB664397
genomic: ACCTGACATCTGACATGGAGAGATTGCAGAACGAAATTCAAGCTCAACTGgttaggctta ... ttttcaacagCTGGCACTTGAGTCTGTCAGAACGGAATATGCTAATGCCCAGCTAGAATGC
EST: ACCTGACATCTGACATGGAGAGATTGCAGAACGAAATTCAAGCTCAACTG CTGGCACTTGAGTCTGTCAGAACGGAATATGCTAATGCCCAGCTAGAATGC
genomic: ACCTGACATCTGACATGGAGAGATTGCAGAACGAAATTCAAGCTCAACTGgttaggctta ... ttttcaacagCTGGCACTTGAGTCTGTCAGAACGGAATATGCTAATGCCCAGCTAGAATGC
ttgaagttttctcataatttgtatagttttcttaccaactccaatttttcaacagCTGGCACTTGAGTCTGTCAGAACGGAATATGCTAATGCCCAGCTAGAATGCAATGCTGCAGATGAGAGGGCCAAAGTTCTTGCAGCAGAAGTCATTCTAC
ttcttac putative branch site (score: 38)
tttttc putative PPT
ataatttgtatagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcggaaaatgtgactaacaaaaaacgaggaagttgtagtttggagttgaagttttctcataatttgtatagttttcttaccaactccaatttttcaacagCTGGCACTTGAGTCTGTCAGAACGGAATATGCTAATGCCCAGCTAGAATGCAATGCTGCAGATGAGAGGGCCAAAGTTCTTGCAGCAGAAGTCATTCTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - -caaaaaa