1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gcatggcttgttttagaatgcttatatcagttctggtgttttggctaactctccattttttctattgtgctaaacgtttttgttgttaatagATCCGGCCAGACAGGCAAACCTTGTATTGGAGTGCCACTTGGCCAAGAGAAGTAGAATCCTTGGCTAGACAATTTCTGCAGAACCCATACAAG
species | Oryza sativa |
transcript | LOC_Os01g68320.4 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAG ATCCGGCCAGACAGGCAAEST: gi|29636635|gb|CB641644.1|CB641644
genomic: GCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAGgcatggcttg ... ttgttaatagATCCGGCCAGACAGGCAA
EST: GCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAG ATCCGGCCAGACAGGCAAACCTTGTATTGGAGTGCCACTTGGCCAAGAGAAEST: gi|29664446|gb|CB660721.1|CB660721
genomic: GCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAGgcatggcttg ... ttgttaatagATCCGGCCAGACAGGCAAACCTTGTATTGGAGTGCCACTTGGCCAAGAGAA
EST: GCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAG ATCCGGCCAGACAGGCAAACCTTGTATTGGAGTGCCACTTGGCCAAGAGAAEST: gi|29675369|gb|CB671644.1|CB671644
genomic: GCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAGgcatggcttg ... ttgttaatagATCCGGCCAGACAGGCAAACCTTGTATTGGAGTGCCACTTGGCCAAGAGAA
EST: GCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAG ATCCGGCCAGACAGGCAAACCTTGTATTGGAGTGCCACTTGGCCAAGAGAAEST: gi|33797128|gb|CF324429.1|CF324429
genomic: GCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAGgcatggcttg ... ttgttaatagATCCGGCCAGACAGGCAAACCTTGTATTGGAGTGCCACTTGGCCAAGAGAA
EST: GCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAG ATCCGGCCAGACAGGCAAACCTTGTATTGGAGTGCCACTTGGCCAAGAGAAEST: gi|88417599|gb|CI581622.1|CI581622
genomic: GCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAGgcatggcttg ... ttgttaatagATCCGGCCAGACAGGCAAACCTTGTATTGGAGTGCCACTTGGCCAAGAGAA
EST: GCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAG ATCCGGCCAGACAGGCAAACCTTGTATTGGAGTGCCACTTGGCCAAGAGAAEST: gi|29645557|gb|CB650564.1|CB650564
genomic: GCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAGgcatggcttg ... ttgttaatagATCCGGCCAGACAGGCAAACCTTGTATTGGAGTGCCACTTGGCCAAGAGAA
EST: GCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAG ATCCGGCCAGACAGGCAAACCTTGTATTGGAGTGCCACTTGGCCAAGAGAAEST: gi|29633338|gb|CB638347.1|CB638347
genomic: GCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAGgcatggcttg ... ttgttaatagATCCGGCCAGACAGGCAAACCTTGTATTGGAGTGCCACTTGGCCAAGAGAA
EST: GCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAG ATCCGGCCAGACAGGCAAACCTTGTATTGGAGTGCCACTTGGCCAAGAGAAEST: gi|29673236|gb|CB669511.1|CB669511
genomic: GCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAGgcatggcttg ... ttgttaatagATCCGGCCAGACAGGCAAACCTTGTATTGGAGTGCCACTTGGCCAAGAGAA
EST: GCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAG ATCCGGCCAGACAGGCAAACCTTGTATTGGAGTGCCACTTGGCCAAGAGAAEST: gi|29644134|gb|CB649141.1|CB649141
genomic: GCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAGgcatggcttg ... ttgttaatagATCCGGCCAGACAGGCAAACCTTGTATTGGAGTGCCACTTGGCCAAGAGAA
EST: GCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAG ATCCGGCCAGACAGGCAAACCTTGTATTGGAGTGCCACTTGGCCAAGAGAAEST: gi|29677571|gb|CB673846.1|CB673846
genomic: GCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAGgcatggcttg ... ttgttaatagATCCGGCCAGACAGGCAAACCTTGTATTGGAGTGCCACTTGGCCAAGAGAA
EST: GCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAG ATCCGGCCAGACAGGCAAACCTTGTATTGGAGTGCCACTTGGCCAAGAGAAEST: gi|29640324|gb|CB645333.1|CB645333
genomic: GCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAGgcatggcttg ... ttgttaatagATCCGGCCAGACAGGCAAACCTTGTATTGGAGTGCCACTTGGCCAAGAGAA
EST: GCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAG ATCCGGCCAGACAGGCAAACCTTGTATTGGAGTGCCACTTGGCCAAGAGAAEST: gi|218485924|gb|FG959170.1|FG959170
genomic: GCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAGgcatggcttg ... ttgttaatagATCCGGCCAGACAGGCAAACCTTGTATTGGAGTGCCACTTGGCCAAGAGAA
EST: GCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAG ATCCGGCCAGACAGGCAAACCTTGTATTGGAGTGCCACTTGGCCAAGAGAAEST: gi|29675371|gb|CB671646.1|CB671646
genomic: GCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAGgcatggcttg ... ttgttaatagATCCGGCCAGACAGGCAAACCTTGTATTGGAGTGCCACTTGGCCAAGAGAA
EST: GCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAG ATCCGGCCAGACAGGCAAACCTTGTATTGGAGTGCCACTTGGCCAAGAGAAEST: gi|29661777|gb|CB658052.1|CB658052
genomic: GCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAGgcatggcttg ... ttgttaatagATCCGGCCAGACAGGCAAACCTTGTATTGGAGTGCCACTTGGCCAAGAGAA
EST: GCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAG ATCCGGCCAGACAGGCAAAEST: gi|29638139|gb|CB643148.1|CB643148
genomic: GCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAGgcatggcttg ... ttgttaatagATCCGGCCAGACAGGCAAA
EST: GCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAG ATCCGGCCAGACAGGCAAACCTTGTATTGGAGTGCCACTTGGCCAAGAGAAEST: gi|29678103|gb|CB674378.1|CB674378
genomic: GCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAGgcatggcttg ... ttgttaatagATCCGGCCAGACAGGCAAACCTTGTATTGGAGTGCCACTTGGCCAAGAGAA
EST: GCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAG ATCCGGCCAGACAGGCAAACCTTGTATTGGAGTGCCACTTGGCCAAGAGAAEST: gi|29633337|gb|CB638346.1|CB638346
genomic: GCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAGgcatggcttg ... ttgttaatagATCCGGCCAGACAGGCAAACCTTGTATTGGAGTGCCACTTGGCCAAGAGAA
EST: GCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAG ATCCGGCCATACAGGCAAACCTTGTATTGGAGTGCCACTTGGCCAAGAGAAEST: gi|29669296|gb|CB665571.1|CB665571
genomic: GCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAGgcatggcttg ... ttgttaatagATCCGGCCAGACAGGCAAACCTTGTATTGGAGTGCCACTTGGCCAAGAGAA
EST: GCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAG ATCCGGCCAGACAGGCAAACCTTGTATTGGAGTGCCACTTGGCCAAGAGAAEST: gi|29670396|gb|CB666671.1|CB666671
genomic: GCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAGgcatggcttg ... ttgttaatagATCCGGCCAGACAGGCAAACCTTGTATTGGAGTGCCACTTGGCCAAGAGAA
EST: GCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAG ATCCGGCCAGACAGGCAAACCTTGTATTGGAGTGCCACTTGGCCAAGAGAAEST: gi|29679220|gb|CB675495.1|CB675495
genomic: GCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAGgcatggcttg ... ttgttaatagATCCGGCCAGACAGGCAAACCTTGTATTGGAGTGCCACTTGGCCAAGAGAA
EST: GCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAG ATCCGGCCAGACAGGCAAACCTTGTATTGGAGTGCCACTTGGCCAAGAGAAEST: gi|29667787|gb|CB664062.1|CB664062
genomic: GCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAGgcatggcttg ... ttgttaatagATCCGGCCAGACAGGCAAACCTTGTATTGGAGTGCCACTTGGCCAAGAGAA
EST: GCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAG ATCCGGCCAGACAGGCAAACCTTGTATTGGAGTGCCACTTGGCCAAGAGAA
genomic: GCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAGgcatggcttg ... ttgttaatagATCCGGCCAGACAGGCAAACCTTGTATTGGAGTGCCACTTGGCCAAGAGAA
gttttggctaactctccattttttctattgtgctaaacgtttttgttgttaatagATCCGGCCAGACAGGCAAACCTTGTATTGGAGTGCCACTTGGCCAAGAGAAGTAGAATCCTTGGCTAGACAATTTCTGCAGAACCCATACAAG
tgctaaa putative branch site (score: 2)
tttttgtt putative PPT
tttttgttgttaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatggcttgttttagaatgcttatatcagttctggtgttttggctaactctccattttttctattgtgctaaacgtttttgttgttaatagATCCGGCCAGACAGGCAAACCTTGTATTGGAGTGCCACTTGGCCAAGAGAAGTAGAATCCTTGGCTAGACAATTTCTGCAGAACCCATACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG