1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtactaccctagaacacttattgcataacttctgaaaataatttcacactctatatcacagtagcaatggataacaaacattttgtctccgtctgattcgatcgatcagTGCTACGCCGAGAAGCAGGCCCTCGGGAGAGTGAGCCAAGAATTCCTCGACATGAGAATAAACCCAGCAGTCTGGGAGCTCAGTGGCCATTTGGTACTGA
species | Oryza sativa |
transcript | LOC_Os01g67520.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCAATGCCCTCATCTCTGAATCTGGCAAGAGAGTGTTCCTGCTACCACAG TGCTACGCCGAGAAGCAGGCCCTCGGGAGAGTGAGCCAAGAATTCCTCGACEST: gi|86494770|gb|CI137403.1|CI137403
genomic: TCAATGCCCTCATCTCTGAATCTGGCAAGAGAGTGTTCCTGCTACCACAGgtactaccct ... gatcgatcagTGCTACGCCGAGAAGCAGGCCCTCGGGAGAGTGAGCCAAGAATTCCTCGAC
EST: TCAATGCCCTCATCTCTGAATCTGGCAAGAGAGTGTTCCTGCTACCACAG TGCTACGCCGAGAAGCAGGCCCTCGGGAGAGTGAGCCAAGAATTCCTCGACEST: gi|86493671|gb|CI136304.1|CI136304
genomic: TCAATGCCCTCATCTCTGAATCTGGCAAGAGAGTGTTCCTGCTACCACAGgtactaccct ... gatcgatcagTGCTACGCCGAGAAGCAGGCCCTCGGGAGAGTGAGCCAAGAATTCCTCGAC
EST: TCAATGCCCTCATCTCTGAATCTGGCAAGAGAGTGTTCCTGCTACCACAG TGCTACGCCGAGAAGCAGGCCCTCGGGAGAGTGAGCCAAGAATTCCTCGACEST: gi|86541414|gb|CI181620.1|CI181620
genomic: TCAATGCCCTCATCTCTGAATCTGGCAAGAGAGTGTTCCTGCTACCACAGgtactaccct ... gatcgatcagTGCTACGCCGAGAAGCAGGCCCTCGGGAGAGTGAGCCAAGAATTCCTCGAC
EST: TCAATGCCCTCATCTCTGAATCTGGCAAGAGAGTGTTCCTGCTACCACAG TGCTACGCCGAGAAGCAGGCCCTCGGGAGAGTGAGCCAAGAATTCCTCGACEST: gi|86852680|gb|CI321800.1|CI321800
genomic: TCAATGCCCTCATCTCTGAATCTGGCAAGAGAGTGTTCCTGCTACCACAGgtactaccct ... gatcgatcagTGCTACGCCGAGAAGCAGGCCCTCGGGAGAGTGAGCCAAGAATTCCTCGAC
EST: CAATGCCCTCATCTCTGAATCTGGCCAAGAGAGTGTTCCTGCTACCACAG TGCTACGCCGAGAAGCAGGGCCCTCGGGAGAGTGAGCCAAGAATTCCTCGAEST: gi|88841973|gb|CI081229.1|CI081229
genomic: CAATGCCCTCATCTCTGAATCTGG-CAAGAGAGTGTTCCTGCTACCACAGgtactaccct ... gatcgatcagTGCTACGCCGAGAAGCA-GGCCCTCGGGAGAGTGAGCCAAGAATTCCTCGA
EST: TCAATGCCCTCATCTCTGAATCTGGCAAGAGAGTGTTCCTGCTACCACAG TGCTACGCCGAGAAGCAGGCCCTCGGGAGAGTGAGCCAAGAATTCCTCGACEST: gi|88216065|gb|CI215914.1|CI215914
genomic: TCAATGCCCTCATCTCTGAATCTGGCAAGAGAGTGTTCCTGCTACCACAGgtactaccct ... gatcgatcagTGCTACGCCGAGAAGCAGGCCCTCGGGAGAGTGAGCCAAGAATTCCTCGAC
EST: TCAATGCCCTCATCTCTGAATCTGGCAAGAGAGTGTTCCTGCTACCACAG TGCTACGCCGAGAAGCAGGCCCTCGGGAGAGTGAGCCAAGAATTCCTCGACEST: gi|88288837|gb|CI517968.1|CI517968
genomic: TCAATGCCCTCATCTCTGAATCTGGCAAGAGAGTGTTCCTGCTACCACAGgtactaccct ... gatcgatcagTGCTACGCCGAGAAGCAGGCCCTCGGGAGAGTGAGCCAAGAATTCCTCGAC
EST: TCAATGCCCTCATCTCTGAATCTGGCAAGAGAGTGTTCCTGCTACCACAG TGCTACGCCGAGAAGCAGGCCCTCGGGAGAGTGAGCCAAGAATTCCTCGACEST: gi|88841930|gb|CI081186.1|CI081186
genomic: TCAATGCCCTCATCTCTGAATCTGGCAAGAGAGTGTTCCTGCTACCACAGgtactaccct ... gatcgatcagTGCTACGCCGAGAAGCAGGCCCTCGGGAGAGTGAGCCAAGAATTCCTCGAC
EST: TCTCTGAATCTGGCAAGAGAGTGTTCCTGCTACCACAG TGCTACGCCGAGAAGCAGGCCCTCGGGAGAGTGAGCCAAGAATTCCTCGACEST: gi|88841929|gb|CI081185.1|CI081185
genomic: TCTCTGAATCTGGCAAGAGAGTGTTCCTGCTACCACAGgtactaccct ... gatcgatcagTGCTACGCCGAGAAGCAGGCCCTCGGGAGAGTGAGCCAAGAATTCCTCGAC
EST: TCAATGCCCTCATCTCTGAATCTGGCAAGAGAGTGTTCCTGCTACCACAG TGCTACGCCGAGAAGCAGGCCCTCGGGAGAGTGAGCCAAGAATTCCTCGAC
genomic: TCAATGCCCTCATCTCTGAATCTGGCAAGAGAGTGTTCCTGCTACCACAGgtactaccct ... gatcgatcagTGCTACGCCGAGAAGCAGGCCCTCGGGAGAGTGAGCCAAGAATTCCTCGAC
atcacagtagcaatggataacaaacattttgtctccgtctgattcgatcgatcagTGCTACGCCGAGAAGCAGGCCCTCGGGAGAGTGAGCCAAGAATTCCTCGACATGAGAATAAACCCAGCAGTCTGGGAGCTCAGTGGCCATTTGGTACTGA
ataacaaacatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactaccctagaacacttattgcataacttctgaaaataatttcacactctatatcacagtagcaatggataacaaacattttgtctccgtctgattcgatcgatcagTGCTACGCCGAGAAGCAGGCCCTCGGGAGAGTGAGCCAAGAATTCCTCGACATGAGAATAAACCCAGCAGTCTGGGAGCTCAGTGGCCATTTGGTACTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA