Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggcatatgctttacttaataccttacaaggttgcaatgtttctagttattaaccaatgacatgtctggctgtagGTATTGAGCCATACGCAACTCTGTATCATTGGGATCTTCCACATAATCTTCAGCAGACTGTGGGTGGTTGGCTTTCTGATAAGATCGT

Basic information

species Oryza sativa
transcript LOC_Os01g67220.3
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g67220.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G044092_T01 (Zea mays), 3'ss of exon 5
gtggcatatgctttacttaataccttacaaggttgcaatgtttctagttattaaccaatgacatgtctggctgtagGTATTGAGCCATACGCAACTCTGTATCATTGGGATCTTCCACATAATCTTCAGCAGACTGTGGGTGGTTGGCTTTCTGATAAGATCGT
||  |||||| |||||| ||||  ||  |||||| ||  | || ||||| ||||||  |    ||||||||  ||||||||||||| ||||||||||| |||||||||||||||||| | ||||||||| ||||| |||| || ||| ||||||| ||||| ||
gtaccatatgttttactgaataaatttaaaggttacagagcttatagttgttaaccgttcgactgtctggcaatagGTATTGAGCCTTACGCAACTCTATATCATTGGGATCTTCCAAACAATCTTCAGAAGACTCTGGGGGGCTGGATTTCTGACAAGATTGT

upper sequence: LOC_Os01g67220.1 (Oryza sativa), 3'ss of exon 5
lower sequence: AC155376.2_FGT005 (Zea mays), 3'ss of exon 5
gtggcatatgctttacttaataccttacaaggttgcaatgtttctagttattaaccaatgacatgtctggctgtagGTATTGAGCCATACGCAACTCTGTATCATTGGGATCTTCCACATAATCTTCAGCAGACTGTGGGTGGTTGGCTTTCTGATAAGATCGT
||| || ||| |||||| |||| |||  |||||| |  || || ||||| ||||||| | |  |||||| |  ||||||||||||| |||||||| ||||||||||||||||||||| | ||||||||  | ||| |||| || ||| ||||||| ||||| ||
gtgtcagatgttttactgaatatctttaaaggttaccgtgcttatagttgttaaccattcatctgtctgacaatagGTATTGAGCCTTACGCAACACTGTATCATTGGGATCTTCCAAACAATCTTCAAAAAACTCTGGGGGGCTGGATTTCTGACAAGATTGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accttacaaggttgcaatgtttctagttattaaccaatgacatgtctggctgtagGTATTGAGCCATACGCAACTCTGTATCATTGGGATCTTCCACATAATCTTCAGCAGACTGTGGGTGGTTGGCTTTCTGATAAGATCGT
                           tattaac  putative branch site (score: 1)
                   tttctagttattaa  TA-rich tract