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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaaatacaatccttataaattttttactctatatgctcatgctcatgctgattttgatcttgatatgtatgattcctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTCCGTGCTCTCTTGGATGTTGGCCTCATTAGGACAACCACTGGAAACCGTG

Basic information

species Oryza sativa
transcript LOC_Os01g67134.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g67134.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM5G815894_T03 (Zea mays), 3'ss of exon 5
gtacaaatacaatccttataaattttttactc--tatatgctcatgctcatgctgattttgatcttgatatgtatgattcctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTCCGTGCTCTCTTGGATGTTGGCCTCATTAGGACAACCACTGGAAACCGTG
       || |||     |||||||    ||   | | |||| ||| |||   || ||  |   ||    ||| |  || | ||  | |||||||||| ||||||| || |||||| ||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||| || ||||| |||||||
------gtaaaatttggctaaatttcgatcttattttttgctgatg-tcacattggttgggcatttatattgtttcttttcgttcatcagGCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTCCGTGCTCTCTTGGATGTTGGCCTTATTAGGACTACAACTGGGAACCGTG

upper sequence: LOC_Os01g67134.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G163081_T04 (Zea mays), 3'ss of exon 5
gtacaaatacaatccttataaattttttactctatatgctcatgctcatgctgattttgatcttgatatgtatgattcctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTCCGTGCTCTCTTGGATGTTGGCCTCATTAGGACAACCACTGGAAACCGTG
||| || |        |||| | | ||   |  |||| || ||| |     || ||| |   ||   | |  |  ||   ||  | |||||||||| ||||||| || |||||| ||||||||||| ||| ||||||||||||||||||||||||||||||| || ||||| || || || |||||||
gtaaaatttggccaaatatataatcttattttaatat-ctgatg-ttgcattggtttggtatttctgacggttctttttgttcatcagGCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTCCGTGCTCTCTTGGATGTTGGCCTTATCAGGACTACAACAGGGAACCGTG

upper sequence: LOC_Os01g67134.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G090738_T01 (Zea mays), 3'ss of exon 5
gtacaaatacaatccttat--aaattttttactctatatgctcatgctcatg---ctgattttgat------cttgatatgtatgat----tcctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTCCGTGCTCTCTTGGATGTTGGCCTCATTAGGACAACCACTGGAAACCGTG
||| || || ||    |||  |||||| ||   ||   || |  |  |  ||    || ||| | |       |    || | ||||    | || |  | |||||||||| ||||||| || ||| || ||||| || || ||| ||||||||||||| ||||| ||||| ||||| |||||||| || |||||||||||||
gtaaaattaaaacaaatatttaaatttattctgcttgctgtttttttttgtgatattgctttgggtgaacaattgagcatttgtgatgattttctgttatcagGCCACTGGTGAGGACTTCTCTGTCGAGCCAGCGGAAGAGAGGAGGCCTTTCCGTGCCCTCTTAGATGTCGGCCTTATTAGGACTACTACTGGAAACCGTG

upper sequence: LOC_Os01g67134.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GLYMA16G03170.1 (Glycine max), 3'ss of exon 5
gtacaaatacaatccttataaattttttactctatatgctcatgct-----catgctgattttgatc-ttgatatgtatgattcctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTCCGTGCTCTCTTGGATGTTGGCCTCATTAGGACAACCACTGGAAACCGTG
|||   ||  | |   |||    | | |  | | | |||   ||||       |     ||||| |  || ||  ||   || | |||  | |||| ||||| |||||||| |  || ||||| |||||    ||| |||| |||||||||||| | |||||||| || |||||||| || ||||| |||||||
gtatttatgaatttgctatgctgtgtgtg-tgtgtgtgcaactgctgcctttctctcagttttgttaattaattggttgtatccttttcatcagGCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGTCTTATTAGGACTACAACTGGCAACCGTG

upper sequence: LOC_Os01g67134.1 (Oryza sativa), 3'ss of exon 5
lower sequence: AT5G39740.2 (Arabidopsis thaliana), 3'ss of exon 5
gtacaaatacaatccttataaattttttactctatatgctcatgctcatgctgattttgatcttgata--tgtat--gattcctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTCCGTGCTCTCTTGGATGTTGGCCTCATTAGGACAACCACTGGAAACCGTG
|||       |    ||||    | || |   || |    | ||    |  | || ||    || |||  || ||   | |   |   | |||||||||| |||||||  | ||| |||||| |||||   ||  | ||||||||||||||  | |||||||| || || ||||| ||||||||||||||||
gtatgttgtgatcttttatttcatcttgaaaataaagaaacttgagagttttcatcttttgattaataactgaatcaaaattgatgaatcagGCCACTGGAGAGGACTTTTCTGTGGAACCAACTGATTCCAGAAGACCTTTCCGTGCTCTTCTTGATGTTGGACTTATCAGGACTACCACTGGAAACCGTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58658098|gb|CK046778.1|CK046778
EST:     GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG                         GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: gi|218502752|gb|FG953444.1|FG953444
EST:     GTGTGCTCACGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATGTTGAG                         GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGAGGCCTTTC
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: gi|58604817|gb|CK015345.1|CK015345
EST:     GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG                         GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGA
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGA
EST: gi|218492462|gb|FG964263.1|FG964263
EST:     GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG                         GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: gi|44667460|gb|CR280894.1|CR280894
EST:     GTGTGCCCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG                         GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: gi|33799084|gb|CF325402.1|CF325402
EST:     GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG                         GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: gi|33654169|gb|CF276783.1|CF276783
EST:     TGTGCTCAAGCTCCGTGGGTTTGGACCAGGAGTACGAGGGCAATATTGAG                         GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGG
genomic: TGTGCTCAAGCTCCGTGG-TTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGG
EST: gi|29657555|gb|CB653830.1|CB653830
EST:     GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG                         GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: gi|3768108|gb|AU032135.1|AU032135
EST:     TACGA-GGCAATATTGAG                         CCCACTGGGGAGGACTNNCTATGTTGAACCAGCTGATGAAA-GCGGCTTTT
genomic: TACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACT-ACTATGTTGAACCAGCTGATGAAAGGCGGCCTTT
EST: gi|33693282|gb|CF321521.1|CF321521
EST:     GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG                         GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: gi|58596831|gb|CK007359.1|CK007359
EST:     GTGTGCTCAAGCTCCGTGG-TTGGACCAGGAGTACGAGGGCAATATTGAG                         GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGGCTTTC
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: gi|58686254|gb|CK074941.1|CK074941
EST:     GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG                         GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: gi|29687293|gb|CB683568.1|CB683568
EST:     GTGTGCTCAAGCTCCGTGGTTTGGACCATGAGTACGAGGGCAATATTGAG                         GCCACTGGGGAGGACTACTATGTTGAACCACCTGATGAAAGGCGGCCTTTC
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: gi|33664208|gb|CF295175.1|CF295175
EST:     TGTGCTCAA-CTNCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG                         GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGG
genomic: TGTGCTCAAGCT-CCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGG
EST: gi|32948464|gb|BP185036.1|BP185036
EST:     GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG                         GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: gi|33690075|gb|CF318314.1|CF318314
EST:     GTGCTCAAGCTTCCGGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG                         GCCACTGGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGG
genomic: GTGCTCAAGCT-CCG-TGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGG-AGGACTACTATGTTGAACCAGCTGATGAAAGG
EST: gi|9884543|gb|BE607376.1|BE607376
EST:     GTGTGCTCACGCTCCGTGGTTTGGACCANGAGTACGAGGGCAATGTTGAG                         GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGAGGCCTTTC
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: gi|32948110|gb|BP184682.1|BP184682
EST:     GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG                         GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: gi|117251436|gb|CT844165.1|CT844165
EST:     GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG                         GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: gi|33688829|gb|CF317068.1|CF317068
EST:     GTGTGCTCAA-CTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG                         GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: gi|58602021|gb|CK012549.1|CK012549
EST:     GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG                         GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: gi|58599223|gb|CK009751.1|CK009751
EST:     GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG                         GCCACTGGGGAGGACTACTAT
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTAT
EST: gi|33823697|gb|CF337654.1|CF337654
EST:     GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG                         GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: gi|33690461|gb|CF318700.1|CF318700
EST:     TGTGCTCAA-CTCCGTGGGTTTGGACCAGGAGTACGAGGGCAATATTGAG                         GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGG
genomic: TGTGCTCAAGCTCCGTGG-TTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGG
EST: gi|163917751|gb|EG711285.1|EG711285
EST:     GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG                         GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGC
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGC
EST: gi|88385545|gb|CI564205.1|CI564205
EST:     GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG                         GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: gi|58683059|gb|CK071746.1|CK071746
EST:     GTGTGCTCAAGCTCCGTGG-TTGGACCAGGAGTACGAGGGCAATATTGAG                         GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: gi|58591763|gb|CF990071.1|CF990071
EST:     GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG                         GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCG
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCG
EST: gi|58593862|gb|CF992170.1|CF992170
EST:     GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG                         GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: gi|12405044|gb|AU166645.1|AU166645
EST:     GTGTGCTCACGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATGTTGAG                         GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGAGGCCTTTC
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: gi|38568588|gb|CD670803.1|CD670803
EST:     GTGTGCTCACGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATGTTGAG                         GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGAGGCCTTTC
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: gi|33664336|gb|CF295303.1|CF295303
EST:     GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG                         GCCACTGNGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: gi|29657556|gb|CB653831.1|CB653831
EST:     AGGAGTACGAGGGCAATATTGAG                         GCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
genomic: AGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
EST: gi|33693846|gb|CF322085.1|CF322085
EST:     GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAG                         GCCACTGGGGAGGACTACTATGTTGAACC
genomic: GTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 73 (downstream exon)
Score: 101

CTTATTGCACTGGCTTGCTTTTGGCTCGCCGTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatac ... ctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTCCGTGCTCTCTTGGATGTTGGCCTCATTAGGACAACCACTGGAAACCGTG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatgctcatgctcatgctgattttgatcttgatatgtatgattcctttggttagGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTCCGTGCTCTCTTGGATGTTGGCCTCATTAGGACAACCACTGGAAACCGTG
                                          ttccttt  CT-rich tract
                    attttgat  TA-rich tract