1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tttttatctctttgtttgttttgttcagtctgtttaggatgtgaagaactgaaatatgtattttctttcatctcgcactaaatctttccttccttttcagGCAACTCTTCAGTTCGCAGGATTCTTTCTTCCATGTTATGTTATAGCCCGTTCTTGTTATGCTTTTCAACACCGGAGGCGAAGACAG
species | Oryza sativa |
transcript | LOC_Os01g66970.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGAGATGTTAGCATGCTGCAGGATGCAACAGTGTTGTTTAGC GCAACTCTTCAGTTCGCAGGATTCTTTCTTCCATGTTATGTTATAGCCCGTEST: gi|58694156|gb|CK082843.1|CK082843
genomic: AGAGATGTTAGCATGCTGCAGGATGCAACAGTGTTGTTTAGCgtaagttcaa ... tccttttcagGCAACTCTTCAGTTCGCAGGATTCTTTCTTCCATGTTATGTTATAGCCCGT
EST: TGTTTGTGAGAGATGTTAGCATGCTGCAGGATGCAACAGTGTTGTTTAGC GCAACTCTTCAGTTCGCAGGATTCTTTCTTCCATGTTATGTTATAGCCCGTEST: gi|88268805|gb|CI377709.1|CI377709
genomic: TGTTTGTGAGAGATGTTAGCATGCTGCAGGATGCAACAGTGTTGTTTAGCgtaagttcaa ... tccttttcagGCAACTCTTCAGTTCGCAGGATTCTTTCTTCCATGTTATGTTATAGCCCGT
EST: TGTTTGTGAGAGATGTTAGCATGCTGCAGGATGCAACAGTGTTGTTTAGC GCAACTCTTCAGTTCGCAGGATTCTTTCTTCCATGTTATGTTATAGCCCGTEST: gi|88963723|gb|CI031075.1|CI031075
genomic: TGTTTGTGAGAGATGTTAGCATGCTGCAGGATGCAACAGTGTTGTTTAGCgtaagttcaa ... tccttttcagGCAACTCTTCAGTTCGCAGGATTCTTTCTTCCATGTTATGTTATAGCCCGT
EST: TGTTTGTGAGAGATGTTAGCATGCTGCAGGATGCAACAGTGTTGTTTAGC GCAACTCTTCAGTTCGCAGGATTCTTTCTTCCATGTTATGTTATAGCCCGTEST: gi|88966199|gb|CI013075.1|CI013075
genomic: TGTTTGTGAGAGATGTTAGCATGCTGCAGGATGCAACAGTGTTGTTTAGCgtaagttcaa ... tccttttcagGCAACTCTTCAGTTCGCAGGATTCTTTCTTCCATGTTATGTTATAGCCCGT
EST: TGTTTGTGAGAGATGTTAGCATGCTGCAGGATGCAACAGTGTTGTTTAGC GCAACTCTTCAGTTCGCAGGATTCTTTCTTCCATGTTATGTTATAGCCCGT
genomic: TGTTTGTGAGAGATGTTAGCATGCTGCAGGATGCAACAGTGTTGTTTAGCgtaagttcaa ... tccttttcagGCAACTCTTCAGTTCGCAGGATTCTTTCTTCCATGTTATGTTATAGCCCGT
gaactgaaatatgtattttctttcatctcgcactaaatctttccttccttttcagGCAACTCTTCAGTTCGCAGGATTCTTTCTTCCATGTTATGTTATAGCCCGTTCTTGTTATGCTTTTCAACACCGGAGGCGAAGACAG
cactaaa putative branch site (score: 2)
ctaaatctttccttcc CT-rich tract
aaatatgtattttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttatctctttgtttgttttgttcagtctgtttaggatgtgaagaactgaaatatgtattttctttcatctcgcactaaatctttccttccttttcagGCAACTCTTCAGTTCGCAGGATTCTTTCTTCCATGTTATGTTATAGCCCGTTCTTGTTATGCTTTTCAACACCGGAGGCGAAGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA