1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagcacttctgtttgctgcacattgttctgtgtttctgttgcattctttgacattcttttggtcactgtgacccagcatatctagttatctactctgaccatgctacttgttcagcatttctgctctgaatttttgtgctgttttactcctacagGCATTTCAAGGAGAAAATGCAACATCTGAGCAGAAAGGAGGAGGCCAAGTGGAATCTTTTGGTGTCCAAGGTGTTGGAGAGCAAAGCAACAACCAGTTCC
species | Oryza sativa |
transcript | LOC_Os01g66890.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CATTCTCGCATGTGCTCTGCACTTGAAACTTGCCGTGTTCCCCTCTGTAG GCATTTCAAGGAGAAAATGCAACATCTGAGCAGAAAGGAGGAGGCCAAGTGEST: gi|88268662|gb|CI378597.1|CI378597
genomic: CATTCTCGCATGTGCTCTGCACTTGAAACTTGCCATGTTCCCCTCTGTAGgtgagcactt ... actcctacagGCATTTCAAGGAGAAAATGCAACATCTGAGCAGAAAGGAGGAGGCCAAGTG
EST: CATTCTCGCATGTGCTCTGCACTTGAAACTTTCCATGTTCCCCTCTGTAG GCATTTCAAGGAGAAAATGCAACATCTGAGCAGAAAGGAGGAGGCCAAGTGEST: gi|88282380|gb|CI403776.1|CI403776
genomic: CATTCTCGCATGTGCTCTGCACTTGAAACTTGCCATGTTCCCCTCTGTAGgtgagcactt ... actcctacagGCATTTCAAGGAGAAAATGCAACATCTGAGCAGAAAGGAGGAGGCCAAGTG
EST: CATTCTCGCATGTGCTCTGCACTTGAAACTTGCCATGTTCCCCTCTGTAG GCATTTCAAGGAGAAAATGCAACATCTGAGCAGAAAGGAGGAGGCCAAGTGEST: gi|86892962|gb|CI318869.1|CI318869
genomic: CATTCTCGCATGTGCTCTGCACTTGAAACTTGCCATGTTCCCCTCTGTAGgtgagcactt ... actcctacagGCATTTCAAGGAGAAAATGCAACATCTGAGCAGAAAGGAGGAGGCCAAGTG
EST: CATTCTCGCATGTGCTCTGCACTTGAAACTTGCCATGTTCCCCTCTGTAG GCATTTCAAGGAGAAAATGCAACATCTGAGCAGAAAGGAGGAGGCCAAGTGEST: gi|88832167|gb|CI017401.1|CI017401
genomic: CATTCTCGCATGTGCTCTGCACTTGAAACTTGCCATGTTCCCCTCTGTAGgtgagcactt ... actcctacagGCATTTCAAGGAGAAAATGCAACATCTGAGCAGAAAGGAGGAGGCCAAGTG
EST: CATTCTCGCATGTGCTCTGCACTTGAAACTTGCCATGTTCCCCTCTGTAG GCATTTCAAGGAGAAAATGCAACATCTGAGCAGAAAGGAGGAGGCCAAGTGEST: gi|55438958|gb|CV732779.1|CV732779
genomic: CATTCTCGCATGTGCTCTGCACTTGAAACTTGCCATGTTCCCCTCTGTAGgtgagcactt ... actcctacagGCATTTCAAGGAGAAAATGCAACATCTGAGCAGAAAGGAGGAGGCCAAGTG
EST: CATTCTCGCATGTGCTCTGCACTTGAAACTTGCCGTGTTCCCCTCTGTAG GCATTTCAAGGAGAAAATGCAACATCTGAGCAGAAAGGAGGAGGCCAAGTGEST: gi|88276362|gb|CI396966.1|CI396966
genomic: CATTCTCGCATGTGCTCTGCACTTGAAACTTGCCATGTTCCCCTCTGTAGgtgagcactt ... actcctacagGCATTTCAAGGAGAAAATGCAACATCTGAGCAGAAAGGAGGAGGCCAAGTG
EST: CATTCTCGCATTTGCTCTGCACTTGAAACTTGCCATGTTCCCCTCTGTAG GCATTTCAAGGAGAAAATGCAACATCTGAGCAGAAAGGAGGAGGCCAAGTGEST: gi|88966559|gb|CI353111.1|CI353111
genomic: CATTCTCGCATGTGCTCTGCACTTGAAACTTGCCATGTTCCCCTCTGTAGgtgagcactt ... actcctacagGCATTTCAAGGAGAAAATGCAACATCTGAGCAGAAAGGAGGAGGCCAAGTG
EST: CATTCTCGCATGTGCTCTGCACTTGAAACTTGCCATGTTCCCCTCTGTAG GCATTTCAAGGAGAAAATGCAACATCTGAGCAGAAAGGAGGAGGCCAAGTGEST: gi|86853111|gb|CI324813.1|CI324813
genomic: CATTCTCGCATGTGCTCTGCACTTGAAACTTGCCATGTTCCCCTCTGTAGgtgagcactt ... actcctacagGCATTTCAAGGAGAAAATGCAACATCTGAGCAGAAAGGAGGAGGCCAAGTG
EST: CATTCTCGCATGTGCTCTGCACTTGAAACTTGCCATGTTCCCCTCTGTAG GCATTTCAAGGAGAAAATGCAACATCTGAGCAGAAAGGAGGAGGCCAAGTG
genomic: CATTCTCGCATGTGCTCTGCACTTGAAACTTGCCATGTTCCCCTCTGTAGgtgagcactt ... actcctacagGCATTTCAAGGAGAAAATGCAACATCTGAGCAGAAAGGAGGAGGCCAAGTG
atgctacttgttcagcatttctgctctgaatttttgtgctgttttactcctacagGCATTTCAAGGAGAAAATGCAACATCTGAGCAGAAAGGAGGAGGCCAAGTGGAATCTTTTGGTGTCCAAGGTGTTGGAGAGCAAAGCAACAACCAGTTCC
ttttactcct CT-rich tract
tgaattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcacttctgtttgctgcacattgttctgtgtttctgttgcattctttgacattcttttggtcactgtgacccagcatatctagttatctactctgaccatgctacttgttcagcatttctgctctgaatttttgtgctgttttactcctacagGCATTTCAAGGAGAAAATGCAACATCTGAGCAGAAAGGAGGAGGCCAAGTGGAATCTTTTGGTGTCCAAGGTGTTGGAGAGCAAAGCAACAACCAGTTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA