1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...attatagttcacaatttcaactatcattttcatatgctcctagggagtattactctatatgctgaatgtttggcttctgtgatcactggtacctgtgcagAGTTCATCATGGGAGGCAAACACATAAAAGTGGAGATCATTTTTTGTCCGATGAGCAAGTCCTATGCATAGGCTCTAGTAGAAAAAGACCTGTTCTGAAA
species | Oryza sativa |
transcript | LOC_Os01g64870.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAGGGGCTTTCTTTAGATATATGGACAACATACCTTGGTGAACTTCTGAA AGTTCATCATGGGAGGCAAACACATAAAAGTGGAGATCATTTTTTGTCCGAEST: gi|4715819|gb|AU056935.1|AU056935
genomic: AAGGGGCTTTCTTTAGATATATGGACAACATACCTTGGTGAACTTCTGAAgtaagatcac ... acctgtgcagAGTTCATCATGGGAGGCAAACACATAAAAGTGGAGATCATTTTTTGTCCGA
EST: AAGGGGCTTTCTTTAGATATATGGACAACATACCTTGGTGAACTTCTGAA AGTTCATCATGGGAGGCAAACACATAAAAGTGGAGATCATTTTTTGTCCGAEST: gi|29644941|gb|CB649948.1|CB649948
genomic: AAGGGGCTTTCTTTAGATATATGGACAACATACCTTGGTGAACTTCTGAAgtaagatcac ... acctgtgcagAGTTCATCATGGGAGGCAAACACATAAAAGTGGAGATCATTTTTTGTCCGA
EST: AAGGGGCTTTCTTTAGATATATGGACAACATACCTTGGTGAACTTCTGAA AGTTCATCATGGGAGGCAAACACATAAAAGTGGAGATCATTTTTTGTCCGAEST: gi|29623235|gb|CB628246.1|CB628246
genomic: AAGGGGCTTTCTTTAGATATATGGACAACATACCTTGGTGAACTTCTGAAgtaagatcac ... acctgtgcagAGTTCATCATGGGAGGCAAACACATAAAAGTGGAGATCATTTTTTGTCCGA
EST: AAGGGGCTTTCTTTAGATATATGGACAACATACCTTGGTGAACTTCTGAA AGTTCATCATGGGAGGCAAACACATAAAAGTGGAGATCATTTTTTGTCCGAEST: gi|58695955|gb|CK084642.1|CK084642
genomic: AAGGGGCTTTCTTTAGATATATGGACAACATACCTTGGTGAACTTCTGAAgtaagatcac ... acctgtgcagAGTTCATCATGGGAGGCAAACACATAAAAGTGGAGATCATTTTTTGTCCGA
EST: AAGGGGCTTTCTTTAGATATATGGACAACATACCTTGGTGAACTTCTGAA AGTTCATCATGGGAGGCAAACACATAAAAGTGGAGATCATTTTTTGTCCGA
genomic: AAGGGGCTTTCTTTAGATATATGGACAACATACCTTGGTGAACTTCTGAAgtaagatcac ... acctgtgcagAGTTCATCATGGGAGGCAAACACATAAAAGTGGAGATCATTTTTTGTCCGA
agtattactctatatgctgaatgtttggcttctgtgatcactggtacctgtgcagAGTTCATCATGGGAGGCAAACACATAAAAGTGGAGATCATTTTTTGTCCGATGAGCAAGTCCTATGCATAGGCTCTAGTAGAAAAAGACCTGTTCTGAAA
tctatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attatagttcacaatttcaactatcattttcatatgctcctagggagtattactctatatgctgaatgtttggcttctgtgatcactggtacctgtgcagAGTTCATCATGGGAGGCAAACACATAAAAGTGGAGATCATTTTTTGTCCGATGAGCAAGTCCTATGCATAGGCTCTAGTAGAAAAAGACCTGTTCTGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - catatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttctg