1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaattcatgtagggttctatatggaataaatatgagttagattaacaaaaatctgttattgaggtgcttcgtcatagacatgccatgccatgtatgatccgtaataggtgcaactgtgcttgttcttatgttagtcttgtttgtgttctatggcagACTGACAAAGGCGACGAAGAACTGTGCAGCGTTTATGTGCCAACAAATCATCTTTACATTGGTGACATATTTCTGGTGAACTCTGAGGAGATAATAAGAC
species | Oryza sativa |
transcript | LOC_Os01g64780.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTATTGGTGAATATGCATTTGGATTTATAACATCAACTGTTGTTCTTCAG ACTGACAAAGGCGACGAAGAACTGTGCAGCGTTTATGTGCCAACAAATCATEST: gi|29626495|gb|CB631506.1|CB631506
genomic: GTATTGGTGAATATGCATTTGGATTTATAACATCAACTGTTGTTCTTCAGgtaattcatg ... tctatggcagACTGACAAAGGCGACGAAGAACTGTGCAGCGTTTATGTGCCAACAAATCAT
EST: GTATTGGTGAATATGCATTTGGATTTATAACATCAACTGTTGTTCTTCAG ACTGACAAAGGCGACGAAGAACTGTGCAGCGTTTATGTGCCAACAAATCATEST: gi|88429235|gb|CI690129.1|CI690129
genomic: GTATTGGTGAATATGCATTTGGATTTATAACATCAACTGTTGTTCTTCAGgtaattcatg ... tctatggcagACTGACAAAGGCGACGAAGAACTGTGCAGCGTTTATGTGCCAACAAATCAT
EST: GTATTGGTGAATATGCATTTGGATTTATAACATCAACTGTTGTTCTTCAG ACTGACAAAGGCGACGAAGAACTGTGCAGCGTTTATGTGCCAACAAATCATEST: gi|29683440|gb|CB679715.1|CB679715
genomic: GTATTGGTGAATATGCATTTGGATTTATAACATCAACTGTTGTTCTTCAGgtaattcatg ... tctatggcagACTGACAAAGGCGACGAAGAACTGTGCAGCGTTTATGTGCCAACAAATCAT
EST: GTATTGGTGAATATGCATTTGGATTTATAACATCAACTGTTGTTCTTCAG ACTGACAAAGGCGACGAAGAACTGTGCAGCGTTTATGTGCCAACAAATCATEST: gi|27547116|gb|CA765115.2|CA765115
genomic: GTATTGGTGAATATGCATTTGGATTTATAACATCAACTGTTGTTCTTCAGgtaattcatg ... tctatggcagACTGACAAAGGCGACGAAGAACTGTGCAGCGTTTATGTGCCAACAAATCAT
EST: GTATTGGTGAATATGCATTTGGATTTATAACATCAACTGTTGTTCTTCAG ACTGACAAAGGCGACGAAGAACTGTGCAGCGTTTATGTGCCAACAAATCATEST: gi|29688878|gb|CB685153.1|CB685153
genomic: GTATTGGTGAATATGCATTTGGATTTATAACATCAACTGTTGTTCTTCAGgtaattcatg ... tctatggcagACTGACAAAGGCGACGAAGAACTGTGCAGCGTTTATGTGCCAACAAATCAT
EST: GTATTGGTGAATATGCATTTGGATTTATAACATCAACTGTTGTTCTTCAG ACTGACAAAGGCGACGAAGAACTGTGCAGCGTTTATGTGCCAACAAATCATEST: gi|27920852|gb|CB096660.1|CB096660
genomic: GTATTGGTGAATATGCATTTGGATTTATAACATCAACTGTTGTTCTTCAGgtaattcatg ... tctatggcagACTGACAAAGGCGACGAAGAACTGTGCAGCGTTTATGTGCCAACAAATCAT
EST: GTATTGGTGAATATGCATTTGGATTTATAACATCAACTGTTGTTCTTCAG ACTGACAAAGGCGACGAAGAACTGTGCAGCGTTTATGTGCCAACAAATCAT
genomic: GTATTGGTGAATATGCATTTGGATTTATAACATCAACTGTTGTTCTTCAGgtaattcatg ... tctatggcagACTGACAAAGGCGACGAAGAACTGTGCAGCGTTTATGTGCCAACAAATCAT
taataggtgcaactgtgcttgttcttatgttagtcttgtttgtgttctatggcagACTGACAAAGGCGACGAAGAACTGTGCAGCGTTTATGTGCCAACAAATCATCTTTACATTGGTGACATATTTCTGGTGAACTCTGAGGAGATAATAAGAC
ttatgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattcatgtagggttctatatggaataaatatgagttagattaacaaaaatctgttattgaggtgcttcgtcatagacatgccatgccatgtatgatccgtaataggtgcaactgtgcttgttcttatgttagtcttgtttgtgttctatggcagACTGACAAAGGCGACGAAGAACTGTGCAGCGTTTATGTGCCAACAAATCATCTTTACATTGGTGACATATTTCTGGTGAACTCTGAGGAGATAATAAGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT