1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...attaagaaaaaagttaacgacttataatatgaaacgaaagtagtatgtaaccttgacttaaactaagatagactgatgattgacattttaatgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTCTAAATGGTTTTCTTCATGCTCCTCGAATTTCTAGAGACTTCCCTGCTTG
species | Oryza sativa |
transcript | LOC_Os01g64090.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTCEST: gi|88473763|gb|CI411034.1|CI411034
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTCEST: gi|86543712|gb|CI183918.1|CI183918
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTCEST: gi|27920704|gb|CB096512.1|CB096512
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTCEST: gi|88238083|gb|CI237932.1|CI237932
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTCEST: gi|88376420|gb|CI535524.1|CI535524
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTCEST: gi|86543033|gb|CI183239.1|CI183239
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTCEST: gi|87034170|gb|CI188794.1|CI188794
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTCEST: gi|88969139|gb|CI382688.1|CI382688
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTCEST: gi|86498451|gb|CI141084.1|CI141084
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTCEST: gi|86526191|gb|CI166397.1|CI166397
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTCEST: gi|86546888|gb|CI187094.1|CI187094
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTCEST: gi|86543087|gb|CI183293.1|CI183293
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTCEST: gi|88216033|gb|CI215882.1|CI215882
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTCEST: gi|87020293|gb|CI261157.1|CI261157
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTCEST: gi|88376017|gb|CI530521.1|CI530521
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTCEST: gi|86529462|gb|CI169668.1|CI169668
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTCEST: gi|88509604|gb|CI437110.1|CI437110
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTCEST: gi|88199182|gb|CI199032.1|CI199032
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTCEST: gi|33683413|gb|CF311652.1|CF311652
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTCEST: gi|88321296|gb|CI533046.1|CI533046
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTCEST: gi|88202396|gb|CI201258.1|CI201258
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTCEST: gi|88199507|gb|CI199357.1|CI199357
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTCEST: gi|86544876|gb|CI185082.1|CI185082
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTCEST: gi|88965837|gb|CI006671.1|CI006671
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTCEST: gi|86529199|gb|CI169405.1|CI169405
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTCEST: gi|88237903|gb|CI237752.1|CI237752
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTCEST: gi|86542550|gb|CI182756.1|CI182756
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTCEST: gi|87033326|gb|CI187950.1|CI187950
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTCEST: gi|55414436|gb|CV726812.1|CV726812
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC GTGAGATGCTTGTACCTGAAGAGCGCTATGGGAAAAGTGATCCGGGTGTTCEST: gi|86543029|gb|CI183235.1|CI183235
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTCEST: gi|55442048|gb|CV734344.1|CV734344
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
EST: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAAC GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
genomic: AAATGAGCGTGAACTTCCTTGTCTCTCTTTTGAAGAAGAATTGGCAGAACgtaagtactc ... atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTC
tgtaaccttgacttaaactaagatagactgatgattgacattttaatgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTCTAAATGGTTTTCTTCATGCTCCTCGAATTTCTAGAGACTTCCCTGCTTG
ttttaat putative branch site (score: 45)
acattttaatgtata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attaagaaaaaagttaacgacttataatatgaaacgaaagtagtatgtaaccttgacttaaactaagatagactgatgattgacattttaatgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTCTAAATGGTTTTCTTCATGCTCCTCGAATTTCTAGAGACTTCCCTGCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - -gaaaaaa
- - - - - - - - - - - - - - - -aaacgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgatga