1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tcactcagtaagtaggattctagaatcaaccattcattgctcttcactatccaatttatttttgtttcctgacaattcatttatgcattttggacttaagGTTGGTTCCTACCATGCATCTTCTTTGTTTGTGGCCACAAGACCACCAACAGCTGGGGTTGTTAGTAGGGGCATTGGTGTTGAAGGTGTCTCCACAGTCT
species | Oryza sativa |
transcript | LOC_Os01g63870.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAATGGGTCTTGTGATGTGTGTTGCATCTGTTATTGCATCAGTCGATTCA GTTGGTTCCTACCATGCATCTTCTTTGTTTGTGGCCACAAGACCACCAACAEST: gi|58682900|gb|CK071587.1|CK071587
genomic: AAATGGGTCTTGTGATGTGTGTTGCATCTGTTATTGCATCAGTCGATTCAgtaagtttat ... tggacttaagGTTGGTTCCTACCATGCATCTTCTTTGTTTGTGGCCACAAGACCACCAACA
EST: GATGTGTGTTGCATCTGTTATTGCATCAGTCGATTCA GTTGGTTCCTACCATGCATCTTCTTTGTTTGTGGCCACAAGACCACCAACAEST: gi|58658393|gb|CK047073.1|CK047073
genomic: GATGTGTGTTGCATCTGTTATTGCATCAGTCGATTCAgtaagtttat ... tggacttaagGTTGGTTCCTACCATGCATCTTCTTTGTTTGTGGCCACAAGACCACCAACA
EST: AAATGGGTCTTGTGATGTGTGTTGCATCTGTTATTGCATCAGTCGATTCA GTTGGTTCCTACCATGCATCTTCTTTGTTTGTGGCCACAAGACCACCAACAEST: gi|58652789|gb|CK041469.1|CK041469
genomic: AAATGGGTCTTGTGATGTGTGTTGCATCTGTTATTGCATCAGTCGATTCAgtaagtttat ... tggacttaagGTTGGTTCCTACCATGCATCTTCTTTGTTTGTGGCCACAAGACCACCAACA
EST: AAATGGGTCTTGTGATGTGTGTTGCATCTGTTATTGCATCAGTCGATTCA GTTGGTTCCTACCATGCATCTTCTTTGTTTGTGGCCACAAGACCEST: gi|58654749|gb|CK043429.1|CK043429
genomic: AAATGGGTCTTGTGATGTGTGTTGCATCTGTTATTGCATCAGTCGATTCAgtaagtttat ... tggacttaagGTTGGTTCCTACCATGCATCTTCTTTGTTTGTGGCCACAAGACC
EST: AAATGGGTCTTGTGATGTGTGTTGCATCTGTTATTGCATCAGTCGATTCA GTTGGTTCCTACCATGCATCTTCTTTGTTTGTGGCCACAAGACCACCAACAEST: gi|58655477|gb|CK044157.1|CK044157
genomic: AAATGGGTCTTGTGATGTGTGTTGCATCTGTTATTGCATCAGTCGATTCAgtaagtttat ... tggacttaagGTTGGTTCCTACCATGCATCTTCTTTGTTTGTGGCCACAAGACCACCAACA
EST: AAATGGGTCTTGTGATGTGTGTTGCATCTGTTATTGCATCAGTCGATTCA GTTGGTTCCTACCATGCATCTTCTTTGTTTGTGGCCACAAGACCACCAACA
genomic: AAATGGGTCTTGTGATGTGTGTTGCATCTGTTATTGCATCAGTCGATTCAgtaagtttat ... tggacttaagGTTGGTTCCTACCATGCATCTTCTTTGTTTGTGGCCACAAGACCACCAACA
actatccaatttatttttgtttcctgacaattcatttatgcattttggacttaagGTTGGTTCCTACCATGCATCTTCTTTGTTTGTGGCCACAAGACCACCAACAGCTGGGGTTGTTAGTAGGGGCATTGGTGTTGAAGGTGTCTCCACAGTCT
tcctgac putative branch site (score: 4)
aatttatttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcactcagtaagtaggattctagaatcaaccattcattgctcttcactatccaatttatttttgtttcctgacaattcatttatgcattttggacttaagGTTGGTTCCTACCATGCATCTTCTTTGTTTGTGGCCACAAGACCACCAACAGCTGGGGTTGTTAGTAGGGGCATTGGTGTTGAAGGTGTCTCCACAGTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - gaatcaa
- - - - - - - - - - - - - - -ccattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttatgca