1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtttgtcatgtagctgactttgctttgatggtaagcgttgacattatatcttctaattgttatattaatgccatgttttctgcagGAAGATGATCAAATTATTGATCTTGTAAAGAAGTATGGACCAACAAAATGGTCTGTCATAGCTAAGGCATTACCTGGCCGTATAGGGAAGCAATGTCGAG
species | Oryza sativa |
transcript | LOC_Os01g62410.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGCAAAAGGTTCTTAATCCTGAACTTATCAAAGGTCCTTGGACTCAAGAG GAAGATGATCAAATTATTGATCTTGTAAAGAAGTATGGACCAACAAAATGGEST: gi|33679187|gb|CF307426.1|CF307426
genomic: GGCAAAAGGTTCTTAATCCTGAACTTATCAAAGGTCCTTGGACTCAAGAGgtttgtcatg ... ttttctgcagGAAGATGATCAAATTATTGATCTTGTAAAGAAGTATGGACCAACAAAATGG
EST: GGCAAAAGGTTCTTAATCCTGAACTTATCAAAGGTCCTTGGACTCAAGAG GAAGATGATCAAATTATTGATCTTGTAAAGAAGTATGGACCAACAAAATGGEST: gi|25799828|gb|CA755789.1|CA755789
genomic: GGCAAAAGGTTCTTAATCCTGAACTTATCAAAGGTCCTTGGACTCAAGAGgtttgtcatg ... ttttctgcagGAAGATGATCAAATTATTGATCTTGTAAAGAAGTATGGACCAACAAAATGG
EST: GGCAAAAGGTTCTTAATCCTGAACTTATCANAGGTCCTTGGACTCAAGAG GAAGATGATCAAATTATTGATCTTGTAAAGAAGTATGGACCAACAAAATGGEST: gi|58655298|gb|CK043978.1|CK043978
genomic: GGCAAAAGGTTCTTAATCCTGAACTTATCAAAGGTCCTTGGACTCAAGAGgtttgtcatg ... ttttctgcagGAAGATGATCAAATTATTGATCTTGTAAAGAAGTATGGACCAACAAAATGG
EST: CTTAATCCTGAACTTATCAAAGGTCCTTGGACTCAAGAG GAAGATGATCAAATTATTGAGCGTGTAAAGAAGTATGGACCAACAAAATGG
genomic: CTTAATCCTGAACTTATCAAAGGTCCTTGGACTCAAGAGgtttgtcatg ... ttttctgcagGAAGATGATCAAATTATTGATCTTGTAAAGAAGTATGGACCAACAAAATGG
gtaagcgttgacattatatcttctaattgttatattaatgccatgttttctgcagGAAGATGATCAAATTATTGATCTTGTAAAGAAGTATGGACCAACAAAATGGTCTGTCATAGCTAAGGCATTACCTGGCCGTATAGGGAAGCAATGTCGAG
tattaat putative branch site (score: 2)
tgttttct putative PPT
acattatatcttctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtcatgtagctgactttgctttgatggtaagcgttgacattatatcttctaattgttatattaatgccatgttttctgcagGAAGATGATCAAATTATTGATCTTGTAAAGAAGTATGGACCAACAAAATGGTCTGTCATAGCTAAGGCATTACCTGGCCGTATAGGGAAGCAATGTCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA