1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ctggattgattgaaatttttgtatgtgtaacttatggaggtcatttccattttcgagcttccaaatttatacctttttgcttattgctaccttccaacagCCCTGGCATAATGCTATTGATATACTCAAGAAAAAAGGGCTGTATTCCCCTTGACATTCTTTCTATTGAAGATGGTAAACGCTTGAAGTCATTCAAACAC
species | Oryza sativa |
transcript | LOC_Os01g60200.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACTTTGTTGTATACAATATCTGATAAGAATGTTCAAGAAATAAAGATCAG CCCTGGCATAATGCTATTGATATACTCAAGAAAAAAGGGCTGTATTCCEST: gi|218505419|gb|FG959318.1|FG959318
genomic: ACTTTGTTGTATACAATATCTGATAAGAATGTTCAAGAAATAAAGATCAGgtaagggaat ... cttccaacagCCCTGGCATAATGCTATTGATATACTCAAGAAAAAAGGGCTGTATTCC
EST: ACTTTGTTGTATACAATATCTGATAAGAATGTTCAAGAAATAAAGATCAG CCCTGGCATAATGCTATTGATATACTCAAGAAAAAAGGGCTGTATTCCCCTEST: gi|58678194|gb|CK066881.1|CK066881
genomic: ACTTTGTTGTATACAATATCTGATAAGAATGTTCAAGAAATAAAGATCAGgtaagggaat ... cttccaacagCCCTGGCATAATGCTATTGATATACTCAAGAAAAAAGGGCTGTATTCCCCT
EST: ACTTTGTTGTATACAATATCTGATAAGAATGTTCAAGAAATAAAGATCAG CCCTGGCATAATGCTATTGATATACTCAAGAAAAAAGGGCTGTATTCCCCTEST: gi|44671831|gb|CR285265.1|CR285265
genomic: ACTTTGTTGTATACAATATCTGATAAGAATGTTCAAGAAATAAAGATCAGgtaagggaat ... cttccaacagCCCTGGCATAATGCTATTGATATACTCAAGAAAAAAGGGCTGTATTCCCCT
EST: ACTTTGTTGTATACAATATCTGATAAGAATGTTCAAGAAATAAAGATCAG CCCTGGCATAATGCTATTGATATACTCAAGAAAAAAGGGCTGTATTCCCCTEST: gi|58596250|gb|CK006778.1|CK006778
genomic: ACTTTGTTGTATACAATATCTGATAAGAATGTTCAAGAAATAAAGATCAGgtaagggaat ... cttccaacagCCCTGGCATAATGCTATTGATATACTCAAGAAAAAAGGGCTGTATTCCCCT
EST: ACTTTGTTGTATACAATATCTGATAAGAATGTTCAAGAAATAAAGATCAG CCCTGGCATAATGCTATTGATATACTCAAGAAAAAAGGGCTGTATTCCCCTEST: gi|218480439|gb|FG952420.1|FG952420
genomic: ACTTTGTTGTATACAATATCTGATAAGAATGTTCAAGAAATAAAGATCAGgtaagggaat ... cttccaacagCCCTGGCATAATGCTATTGATATACTCAAGAAAAAAGGGCTGTATTCCCCT
EST: ACTTTGTTGTATACAATATCTGATAAGAATGTTCAAGAAATAAAGATCAG CCCTGGCATAATGCTATTGATATACTCAAGAAAAAAGGGCTGTATTCCCCTEST: gi|58599623|gb|CK010151.1|CK010151
genomic: ACTTTGTTGTATACAATATCTGATAAGAATGTTCAAGAAATAAAGATCAGgtaagggaat ... cttccaacagCCCTGGCATAATGCTATTGATATACTCAAGAAAAAAGGGCTGTATTCCCCT
EST: ACTTTGTTGTATACAATATCTGATAAGAATGTTCAAGAAATAAAGATCAG CCCTGGCATAATGCTATTGATATACTCAAGAAAAAAGGGCTGTATTCCCCTEST: gi|218500120|gb|FG948314.1|FG948314
genomic: ACTTTGTTGTATACAATATCTGATAAGAATGTTCAAGAAATAAAGATCAGgtaagggaat ... cttccaacagCCCTGGCATAATGCTATTGATATACTCAAGAAAAAAGGGCTGTATTCCCCT
EST: ACTTTGTTGTATACAATATCTGATAAGAATGTTCAAGAAATAAAGATCAG CCCTGGCATAATGCTATTGATATACTCAAGAAAAAAGGGCTGTATTCCCCT
genomic: ACTTTGTTGTATACAATATCTGATAAGAATGTTCAAGAAATAAAGATCAGgtaagggaat ... cttccaacagCCCTGGCATAATGCTATTGATATACTCAAGAAAAAAGGGCTGTATTCCCCT
tccattttcgagcttccaaatttatacctttttgcttattgctaccttccaacagCCCTGGCATAATGCTATTGATATACTCAAGAAAAAAGGGCTGTATTCCCCTTGACATTCTTTCTATTGAAGATGGTAAACGCTTGAAGTCATTCAAACAC
ctaccttcc CT-rich tract
aaatttataccttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctggattgattgaaatttttgtatgtgtaacttatggaggtcatttccattttcgagcttccaaatttatacctttttgcttattgctaccttccaacagCCCTGGCATAATGCTATTGATATACTCAAGAAAAAAGGGCTGTATTCCCCTTGACATTCTTTCTATTGAAGATGGTAAACGCTTGAAGTCATTCAAACAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - -ttgattg
- - - - - - - - - ttgtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgctac