1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaacatatatgcctccaaagttctatgttgcagttaatgttgctgcaagcgggtcacttagtagttagtactgacaaacattttttttatgttctcacagGTTGCAAGGGCAATTCTTGAGAACCCTAATGATATCACAAAAGTTCATTTAGTCTATGCAAATGTCACGCATGACGACATTCTTCTGAAG
species | Oryza sativa |
transcript | LOC_Os01g59930.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAGCTTTTGGAATGCTAGCTGGTGGATCAGGCATCACTCCCATGTTCCAA GTTGCAAGGGCAATTCTTGAGAACCCTAATGATATCACAAAAGTTCATTTAEST: gi|58685456|gb|CK074143.1|CK074143
genomic: GAGCTTTTGGAATGCTAGCTGGTGGATCAGGCATCACTCCCATGTTCCAAgtaacatata ... gttctcacagGTTGCAAGGGCAATTCTTGAGAACCCTAATGATATCACAAAAGTTCATTTA
EST: GAGCTTTTGGAATGCTAGCTGGTGGATCAGGCATCACTCCCATGTTCCAA GTTGCAAGGGCAATTCTTGAGAACCCTAATGATATCACAAAAGTTCATTEST: gi|88201419|gb|CI201774.1|CI201774
genomic: GAGCTTTTGGAATGCTAGCTGGTGGATCAGGCATCACTCCCATGTTCCAAgtaacatata ... gttctcacagGTTGCAAGGGCAATTCTTGAGAACCCTAATGATATCACAAAAGTTCATT
EST: GTGGATCAGGCATCACTCCCATGTTCCAA GTTGCAAGGGCAATTCTTGAGAACCCTAATGATATCACAAAAGTTCATTTAEST: gi|88987863|gb|CI017952.1|CI017952
genomic: GTGGATCAGGCATCACTCCCATGTTCCAAgtaacatata ... gttctcacagGTTGCAAGGGCAATTCTTGAGAACCCTAATGATATCACAAAAGTTCATTTA
EST: CTCCCATGTTCCAA GTTGCAAGGGCAATTCTTGAGAACCCTAATGATATCACAAAAGTTCATTTAEST: gi|58689499|gb|CK078186.1|CK078186
genomic: CTCCCATGTTCCAAgtaacatata ... gttctcacagGTTGCAAGGGCAATTCTTGAGAACCCTAATGATATCACAAAAGTTCATTTA
EST: GAGCTTTTGGAATGCTAGCTGGTGGATCAGGCATCACTCCCATGTTCCAA GTTGCAAGGGCAATTCTTGAGAACCCTAATGATATCACAAAAGTTCATTTAEST: gi|58684839|gb|CK073526.1|CK073526
genomic: GAGCTTTTGGAATGCTAGCTGGTGGATCAGGCATCACTCCCATGTTCCAAgtaacatata ... gttctcacagGTTGCAAGGGCAATTCTTGAGAACCCTAATGATATCACAAAAGTTCATTTA
EST: GAGCTTTTGGAATGCTAGCTGGTGGATCAGGCATCACTCCCATGTTCCAA GTTGCAAGGGCAATTCTTGAGAACCCTAATGATATCACAAAAGTTCATTTAEST: gi|58678583|gb|CK067270.1|CK067270
genomic: GAGCTTTTGGAATGCTAGCTGGTGGATCAGGCATCACTCCCATGTTCCAAgtaacatata ... gttctcacagGTTGCAAGGGCAATTCTTGAGAACCCTAATGATATCACAAAAGTTCATTTA
EST: GAGCTTTTGGAATGCTAGCTGGTGGATCAGGCATCACTCCCATGTTCCAA GTTGCAAGGGCAATTCTTGAGAACCCTAATGATATCACAAAAGTTCATTTAEST: gi|58608501|gb|CK036534.1|CK036534
genomic: GAGCTTTTGGAATGCTAGCTGGTGGATCAGGCATCACTCCCATGTTCCAAgtaacatata ... gttctcacagGTTGCAAGGGCAATTCTTGAGAACCCTAATGATATCACAAAAGTTCATTTA
EST: TTTTGGAATGCTAGCTGGTGGATCAGGCATCACTCCCATGTTCCAA GTTGCAAGGGCGATTCTTGAGAACCCTAATGATATCACAAAAGTTCATTTA
genomic: TTTTGGAATGCTAGCTGGTGGATCAGGCATCACTCCCATGTTCCAAgtaacatata ... gttctcacagGTTGCAAGGGCAATTCTTGAGAACCCTAATGATATCACAAAAGTTCATTTA
caagcgggtcacttagtagttagtactgacaaacattttttttatgttctcacagGTTGCAAGGGCAATTCTTGAGAACCCTAATGATATCACAAAAGTTCATTTAGTCTATGCAAATGTCACGCATGACGACATTCTTCTGAAG
tactgac putative branch site (score: 52)
ttttttttatgttctc putative PPT
aaacattttttttatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacatatatgcctccaaagttctatgttgcagttaatgttgctgcaagcgggtcacttagtagttagtactgacaaacattttttttatgttctcacagGTTGCAAGGGCAATTCTTGAGAACCCTAATGATATCACAAAAGTTCATTTAGTCTATGCAAATGTCACGCATGACGACATTCTTCTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG