1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaatgagtttataaatctcaatggctgctgatatttgatatccaaatattttattgtccttaaactatttatgctgcaaccttttcattattttcaaacttttcattattttccacattcatttgctgactatagatttcaaaatatttgaatagAGTGTAAAGAGCAGCGAAAATCTTACTAGAAGACCTAGCTCCTACCATTCGTATTCCCAAAGCCCACCTTACGATTTTCAATATGAAGATAGACGATATG
species | Oryza sativa |
transcript | LOC_Os01g59850.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGAAGTATGCTGGTGGGAAGTCCACGGACAAACCAGTCAATGATAGTGAG AGTGTAAAGAGCAGCGAAAATCTTACTAGAAGACCTAGCTCCTACCATTCGEST: gi|29634934|gb|CB639943.1|CB639943
genomic: AGAAGTATGCTGGTGGGAAGTCCACGGACAAACCAGTCAATGATAGTGAGgtaatgagtt ... atttgaatagAGTGTAAAGAGCAGCGAAAATCTTACTAGAAGACCTAGCTCCTACCATTCG
EST: GAAGTATGCTGGTGGGGAAGTCCACGGACAAACCAGTCAATGATAGTGAG AGTGTAAAGAGCAGCGAAAATCTTACTAGAAGACCTAGCTCCTACCATTCGEST: gi|58608380|gb|CK036413.1|CK036413
genomic: GAAGTATGCTGGTGGG-AAGTCCACGGACAAACCAGTCAATGATAGTGAGgtaatgagtt ... atttgaatagAGTGTAAAGAGCAGCGAAAATCTTACTAGAAGACCTAGCTCCTACCATTCG
EST: GAAGTATGCGTGGTGGGAAGTCCACGGACAAACCAGTCAATGATAGTGAG AGTGTAAAGAGCAGCGAAAATGATACTAGAAGACCTAGCTCCTACCATTCGEST: gi|29623952|gb|CB628963.1|CB628963
genomic: GAAGTATGC-TGGTGGGAAGTCCACGGACAAACCAGTCAATGATAGTGAGgtaatgagtt ... atttgaatagAGTGTAAAGAGCAGCGAAAATCTTACTAGAAGACCTAGCTCCTACCATTCG
EST: AGAAGTATGCTGGTGGGAAGTCCACGGACAAACCAGTCAATGATAGTGAG AGTGTAAAGAGCAGCGAAAATGATACTAGAAGACCTAGCTCCTACCATTCGEST: gi|58663796|gb|CK052482.1|CK052482
genomic: AGAAGTATGCTGGTGGGAAGTCCACGGACAAACCAGTCAATGATAGTGAGgtaatgagtt ... atttgaatagAGTGTAAAGAGCAGCGAAAATCTTACTAGAAGACCTAGCTCCTACCATTCG
EST: AGAAGTATGCTGGTGGGAAGTCCACGGACAAACCAGTCAATGATAGTGAG AGTGTAAAGAGCAGCGAAAATGATACTAGAAGACCTAGCTCCTACCATTCGEST: gi|29630583|gb|CB635592.1|CB635592
genomic: AGAAGTATGCTGGTGGGAAGTCCACGGACAAACCAGTCAATGATAGTGAGgtaatgagtt ... atttgaatagAGTGTAAAGAGCAGCGAAAATCTTACTAGAAGACCTAGCTCCTACCATTCG
EST: AGAAGTATGCTGGTGGGAAGTCCACGGACAAACCAGTCAATGATAGTGAG AGTGTAAAGAGCAGCGAAAATGATACTAGAAGACCTAGCTCCTACCATTCGEST: gi|29624489|gb|CB629500.1|CB629500
genomic: AGAAGTATGCTGGTGGGAAGTCCACGGACAAACCAGTCAATGATAGTGAGgtaatgagtt ... atttgaatagAGTGTAAAGAGCAGCGAAAATCTTACTAGAAGACCTAGCTCCTACCATTCG
EST: AGAAGTATGCTGGTGGGAAGTCCACGGACAAACCAGTCAATGATAGTGAG AGTGTAAAGAGCAGCGAAAATGATACTAGAAGACCTAGCTCCTACCATTCG
genomic: AGAAGTATGCTGGTGGGAAGTCCACGGACAAACCAGTCAATGATAGTGAGgtaatgagtt ... atttgaatagAGTGTAAAGAGCAGCGAAAATCTTACTAGAAGACCTAGCTCCTACCATTCG
tttcattattttccacattcatttgctgactatagatttcaaaatatttgaatagAGTGTAAAGAGCAGCGAAAATCTTACTAGAAGACCTAGCTCCTACCATTCGTATTCCCAAAGCCCACCTTACGATTTTCAATATGAAGATAGACGATATG
tgctgac putative branch site (score: 27)
tatagatttcaaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgagtttataaatctcaatggctgctgatatttgatatccaaatattttattgtccttaaactatttatgctgcaaccttttcattattttcaaacttttcattattttccacattcatttgctgactatagatttcaaaatatttgaatagAGTGTAAAGAGCAGCGAAAATCTTACTAGAAGACCTAGCTCCTACCATTCGTATTCCCAAAGCCCACCTTACGATTTTCAATATGAAGATAGACGATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA