1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtacgcacataaacttgtaggccatgtagacataattttatgattatcctctaatgctgtgatgtactagGGTCTATGGTGAACCCATTTCTGTAAAAGAATTGGCTGATCGTGTGGCTAGCTACGTTCATCTTTGTACACTCTACTGGTGGCTCAG
species | Oryza sativa |
transcript | LOC_Os01g59600.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGCAGGCAAATTGTTTCAAGAGCAAAATCGGAAGCGGCCAGTTATGAGAA GGTCTATGGTGAACCCATTTCTGTAAAAGAATTGGCTGATCGTGTGGCTAGEST: gi|27576784|gb|CA999478.1|CA999478
genomic: GGCAGGCAAATTGTTTCAAGAGCAAAATCGGAAGCGGCCAGTTATGAGAAgtacgcacat ... gatgtactagGGTCTATGGTGAACCCATTTCTGTAAAAGAATTGGCTGATCGTGTGGCTAG
EST: GGCAGGCAAATTGTTTCAAGAGCAAAATCGGAAGCGGCCAGTTATGAGAA GGTCTATGGTGAACCCATTTCTGTAAAAGAATTGGCTGATCGTGTGGCTAGEST: gi|218496122|gb|FG967266.1|FG967266
genomic: GGCAGGCAAATTGTTTCAAGAGCAAAATCGGAAGCGGCCAGTTATGAGAAgtacgcacat ... gatgtactagGGTCTATGGTGAACCCATTTCTGTAAAAGAATTGGCTGATCGTGTGGCTAG
EST: GGCAGGCAAATTGTTTCAAGAGCAAAATCGGAAGCGGCCAGTTATGAGAA GGTCTATGGTGAACCCATTTCTGTAAAAGAATTGGCTGATCGTGTGGCTAGEST: gi|58601557|gb|CK012085.1|CK012085
genomic: GGCAGGCAAATTGTTTCAAGAGCAAAATCGGAAGCGGCCAGTTATGAGAAgtacgcacat ... gatgtactagGGTCTATGGTGAACCCATTTCTGTAAAAGAATTGGCTGATCGTGTGGCTAG
EST: GGCAGGCAAATTGTTTCAAGAGCAAAATCGGAAGCGGCCAGTTATGAGAA GGTCTATGGTGAACCCATTTCTGTAAAAGAATTGGCTGATCGTGTGGCTAGEST: gi|29668732|gb|CB665007.1|CB665007
genomic: GGCAGGCAAATTGTTTCAAGAGCAAAATCGGAAGCGGCCAGTTATGAGAAgtacgcacat ... gatgtactagGGTCTATGGTGAACCCATTTCTGTAAAAGAATTGGCTGATCGTGTGGCTAG
EST: GGCAGGCAAATTGTTTCAAGAGCAAAATCGGAAGCGGCCAGTTATGAGAA GGTCTATGGTGAACCCATTTCTGTAAAAGAATTGGCTGATCGTGTGGCTAGEST: gi|29668731|gb|CB665006.1|CB665006
genomic: GGCAGGCAAATTGTTTCAAGAGCAAAATCGGAAGCGGCCAGTTATGAGAAgtacgcacat ... gatgtactagGGTCTATGGTGAACCCATTTCTGTAAAAGAATTGGCTGATCGTGTGGCTAG
EST: GGCAGGCAAATTGTTTCAAGAGCAAAATCGGAAGCGGCCAGTTATGAGAA GGTCTATGGTGAACCCATTTCTGTAAAAGAATTGGCTGATCGTGTGGCTAGEST: gi|88694188|gb|CI738226.1|CI738226
genomic: GGCAGGCAAATTGTTTCAAGAGCAAAATCGGAAGCGGCCAGTTATGAGAAgtacgcacat ... gatgtactagGGTCTATGGTGAACCCATTTCTGTAAAAGAATTGGCTGATCGTGTGGCTAG
EST: GGCAGGCAAATTGTTTCAAGAGCAAAATCGGAAGCGGCCAGTTATGAGAA GGTCTATGGTGAACCCATTTCTGTAAAAGAATTGGCTGATCGTGTGGCTAG
genomic: GGCAGGCAAATTGTTTCAAGAGCAAAATCGGAAGCGGCCAGTTATGAGAAgtacgcacat ... gatgtactagGGTCTATGGTGAACCCATTTCTGTAAAAGAATTGGCTGATCGTGTGGCTAG
tgtaggccatgtagacataattttatgattatcctctaatgctgtgatgtactagGGTCTATGGTGAACCCATTTCTGTAAAAGAATTGGCTGATCGTGTGGCTAGCTACGTTCATCTTTGTACACTCTACTGGTGGCTCAG
ctctaat putative branch site (score: 3)
tagacataattttatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgcacataaacttgtaggccatgtagacataattttatgattatcctctaatgctgtgatgtactagGGTCTATGGTGAACCCATTTCTGTAAAAGAATTGGCTGATCGTGTGGCTAGCTACGTTCATCTTTGTACACTCTACTGGTGGCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG