1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttggggggctccttttctccaccctcatactactagctgacagtgcagtcgtagcgtatttgtgccacagcctactcaatttgttcatttgtatttacagGGAACTTCCTCCTGATTCGATCCTTCAGGCCATAAGAGATGAAACAATGTATGATCCACGTGAAAGAATTGAGATGGCGCAGGGCCATTCACTTTACCGG
species | Oryza sativa |
transcript | LOC_Os01g58740.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCAATCCTGAAGGCACTGTACAAAATTTTGATCAAGAG GGAACTTCCTCCTGATTCGATCCTTCAGGCCATAAGAGATGAAACAATGTAEST: gi|86537374|gb|CI177580.1|CI177580
genomic: CCAATCCTGAAGGCACTGTACAAAATTTTGATCAAGAGgttagtatgt ... gtatttacagGGAACTTCCTCCTGATTCGATCCTTCAGGCCATAAGAGATGAAACAATGTA
EST: GAAGGCACTGTACAAAATTTTGATCAAGAG GGAACTTCCTCCTGATTCGATCCTTCAGGCCATAAGAGATGAAACAATGTAEST: gi|86493591|gb|CI136224.1|CI136224
genomic: GAAGGCACTGTACAAAATTTTGATCAAGAGgttagtatgt ... gtatttacagGGAACTTCCTCCTGATTCGATCCTTCAGGCCATAAGAGATGAAACAATGTA
EST: GTTGAGATGTGCCCAATCCTGAAGGCACTGTACAAAATTTTGATCAAGAG GGAACTTCCTCCTGATTCGATCCTTCAGGCCATAAGAGATGAAACAATGTAEST: gi|86487645|gb|CI130278.1|CI130278
genomic: GTTGAGATGTGCCCAATCCTGAAGGCACTGTACAAAATTTTGATCAAGAGgttagtatgt ... gtatttacagGGAACTTCCTCCTGATTCGATCCTTCAGGCCATAAGAGATGAAACAATGTA
EST: GTTGAGATGTGCCCAATCCTGAAGGCACTGTACAAAATTTTGATCAAGAG GGAACTTCCTCCTGATTCGATCCTTCAGGCCATAAGAGATGAAACAATGTAEST: gi|86537396|gb|CI177602.1|CI177602
genomic: GTTGAGATGTGCCCAATCCTGAAGGCACTGTACAAAATTTTGATCAAGAGgttagtatgt ... gtatttacagGGAACTTCCTCCTGATTCGATCCTTCAGGCCATAAGAGATGAAACAATGTA
EST: GTTGAGATGTGCCCAATCCTGAAGGCACTGTACAAAATTTTGATCAAGAG GGAACTTCCTCCGTGATTCGATCCTTCAGGCCATAAGAGATGAAACAATGTEST: gi|89177422|gb|CI250871.1|CI250871
genomic: GTTGAGATGTGCCCAATCCTGAAGGCACTGTACAAAATTTTGATCAAGAGgttagtatgt ... gtatttacagGGAACTTCCTCC-TGATTCGATCCTTCAGGCCATAAGAGATGAAACAATGT
EST: GTTGAGATGTGCCCAATCCTGAAGGCACTGTACAAAATTTTGATCAAGAG GGAACTTCCTCCTGATTCGATCCTTCAGGCCATAAGAGATGAAACAATGTAEST: gi|86831660|gb|CI301510.1|CI301510
genomic: GTTGAGATGTGCCCAATCCTGAAGGCACTGTACAAAATTTTGATCAAGAGgttagtatgt ... gtatttacagGGAACTTCCTCCTGATTCGATCCTTCAGGCCATAAGAGATGAAACAATGTA
EST: GTTGAGATGTGCCCAATCCTGAAGGCACTGTACAAAATTTTGATCAAGAG GGAACTTCCTCCTGATTCGACCCTTCAGGCCATAAGAGATGAAACAATGTAEST: gi|88902622|gb|CI088160.1|CI088160
genomic: GTTGAGATGTGCCCAATCCTGAAGGCACTGTACAAAATTTTGATCAAGAGgttagtatgt ... gtatttacagGGAACTTCCTCCTGATTCGATCCTTCAGGCCATAAGAGATGAAACAATGTA
EST: GTTGAGATGTGCCCAATCCTGAAGGCACTGTACAAAATTTTGATCAAGAG GGAACTTCCTCCTGATTCGATCCTTCAGGCCATAAGAGATGAAACAATGTA
genomic: GTTGAGATGTGCCCAATCCTGAAGGCACTGTACAAAATTTTGATCAAGAGgttagtatgt ... gtatttacagGGAACTTCCTCCTGATTCGATCCTTCAGGCCATAAGAGATGAAACAATGTA
cagtcgtagcgtatttgtgccacagcctactcaatttgttcatttgtatttacagGGAACTTCCTCCTGATTCGATCCTTCAGGCCATAAGAGATGAAACAATGTATGATCCACGTGAAAGAATTGAGATGGCGCAGGGCCATTCACTTTACCGG
ttcatttgtattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggggggctccttttctccaccctcatactactagctgacagtgcagtcgtagcgtatttgtgccacagcctactcaatttgttcatttgtatttacagGGAACTTCCTCCTGATTCGATCCTTCAGGCCATAAGAGATGAAACAATGTATGATCCACGTGAAAGAATTGAGATGGCGCAGGGCCATTCACTTTACCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - ggctcct
- - - - - - - - ctccacc
- - - - - - - - - - - - - - - - - -gctgaca
- - - - - - - - - - - - - - - - - - - - - -tgcagtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgtgc