1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgtgttcacttgcctaacttttcaatctaatttactgtttgacattaatagaccatgtggagttgtgtcatggttcatatccgcaactccacaatatcttattgaacagatttgatccctgaaatagtactatgtaatctaagctgatttataccttttgatctgcagATACTGGAAAAGTCGAAACCAGTGATTGTTGCAGGAGACCTTAACTGTGCTCGTCAAAGCATTGACATTCACAATCCTCCA
species | Oryza sativa |
transcript | LOC_Os01g58690.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AATTACAGGGTCAATAACTGGGATCCGTGTTTCAGCAACTATGTAAAA ATACTGGGAAAAGTCGAAACCAGTGATTGGTGCAGGAGACCTTAACTGTGCEST: gi|86420470|gb|CI056459.1|CI056459
genomic: AATTACAGGGTCAATAACTGGGATCCGTGTTTCAGCAACTATGTAAAAgtgtgttcac ... tgatctgcagATACTGG-AAAAGTCGAAACCAGTGATTGTTGCAGGAGACCTTAACTGTGC
EST: AATTACAGGGTCAATAACTGGGATCCGTGTTTCAGCAACTATGTAAAA ATACTGGAAAAGTCGAAACCAGTGATTGTTGCAGGAGACCTTAACTGTGCTEST: gi|8528070|gb|AU092885.1|AU092885
genomic: AATTACAGGGTCAATAACTGGGATCCGTGTTTCAGCAACTATGTAAAAgtgtgttcac ... tgatctgcagATACTGGAAAAGTCGAAACCAGTGATTGTTGCAGGAGACCTTAACTGTGCT
EST: AATTACAGGGTCAATAACTGGGATCCGTGTTTCAGCAACTATGTAAAA ATACTGGAAAAGTCGAAACCAGTGATTGTTGCAGGAGACCTTAACTGTGCT
genomic: AATTACAGGGTCAATAACTGGGATCCGTGTTTCAGCAACTATGTAAAAgtgtgttcac ... tgatctgcagATACTGGAAAAGTCGAAACCAGTGATTGTTGCAGGAGACCTTAACTGTGCT
gatccctgaaatagtactatgtaatctaagctgatttataccttttgatctgcagATACTGGAAAAGTCGAAACCAGTGATTGTTGCAGGAGACCTTAACTGTGCTCGTCAAAGCATTGACATTCACAATCCTCCA
ttttgat putative branch site (score: 4)
tacctttt CT-rich tract
tgatttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgttcacttgcctaacttttcaatctaatttactgtttgacattaatagaccatgtggagttgtgtcatggttcatatccgcaactccacaatatcttattgaacagatttgatccctgaaatagtactatgtaatctaagctgatttataccttttgatctgcagATACTGGAAAAGTCGAAACCAGTGATTGTTGCAGGAGACCTTAACTGTGCTCGTCAAAGCATTGACATTCACAATCCTCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA