1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cacactgtacataacaatgaacttattaacttatactccatttgttgattgctaatagatggaataagataatttatcagttcttctgtttctttcccagGAAAGTATACTCCTCAGTACAAGTGGCTTGAAGCTGAGTTTCCCAAGGTTAACAGGAGTGAAACGCCATGGTTGATAGTGCTATTGCATGCTCCGTGGTA
species | Oryza sativa |
transcript | LOC_Os01g56880.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAAAAGAGCATCTGCTTATATTATTGTCTTGGCATCATATTCATCATATG GAAAGTATACTCCTCAGTACAAGTGGCTTGAAGCTGAGTTTCCCAAGGTTAEST: gi|33793731|gb|CF322748.1|CF322748
genomic: CAAAAGAGCATCTGCTTATATTATTGTCTTGGCATCATATTCATCATATGgtatgtaata ... tctttcccagGAAAGTATACTCCTCAGTACAAGTGGCTTGAAGCTGAGTTTCCCAAGGTTA
EST: CAAAAGAGCATCTGCTTATATTATTGTCTTGGCATCATATTCATCATATG GAAAGTATACTCCTCAGTACAAGTGGCTTGAAGCTGAGTTTCCCAAGGTTAEST: gi|29684554|gb|CB680829.1|CB680829
genomic: CAAAAGAGCATCTGCTTATATTATTGTCTTGGCATCATATTCATCATATGgtatgtaata ... tctttcccagGAAAGTATACTCCTCAGTACAAGTGGCTTGAAGCTGAGTTTCCCAAGGTTA
EST: CAAAAGAGCATCTGCTTATATTATTGTCTTGGCATCATATTCATCATATG GAAAGTATACTCCTCAGTACAAGTGGCTTGAAGCTGAGTTTCCCAAGGTTAEST: gi|58695263|gb|CK083950.1|CK083950
genomic: CAAAAGAGCATCTGCTTATATTATTGTCTTGGCATCATATTCATCATATGgtatgtaata ... tctttcccagGAAAGTATACTCCTCAGTACAAGTGGCTTGAAGCTGAGTTTCCCAAGGTTA
EST: CAAAAGAGCATCTGCTTATATTATTGTCTTGGCATCATATTCATCATATG GAAAGTATACTCCTCAGTAC
genomic: CAAAAGAGCATCTGCTTATATTATTGTCTTGGCATCATATTCATCATATGgtatgtaata ... tctttcccagGAAAGTATACTCCTCAGTAC
tgattgctaatagatggaataagataatttatcagttcttctgtttctttcccagGAAAGTATACTCCTCAGTACAAGTGGCTTGAAGCTGAGTTTCCCAAGGTTAACAGGAGTGAAACGCCATGGTTGATAGTGCTATTGCATGCTCCGTGGTA
tgctaat putative branch site (score: 14)
tcagttcttctgtttc putative PPT
aataagataatttatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacactgtacataacaatgaacttattaacttatactccatttgttgattgctaatagatggaataagataatttatcagttcttctgtttctttcccagGAAAGTATACTCCTCAGTACAAGTGGCTTGAAGCTGAGTTTCCCAAGGTTAACAGGAGTGAAACGCCATGGTTGATAGTGCTATTGCATGCTCCGTGGTA
- - ctgtaca
- - - - - - - - - - - - - - - - - - -ccatttg
- - - - - - - - - - - - - - - - - - - - - - -tgattgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaataaga