1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgttctaagatattgttcttggtatgttctaagatactatttgctgtggtctcatccgctgatgacacgattgtgatctttgtctcatgatcaatgacagCACATGCTAATCGACCAGCATATTCATCATTGGAGAGAGTGATACAGCAAGCAACTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAG
species | Oryza sativa |
transcript | LOC_Os01g56820.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCCAGAGTACAGGCAGAATGTTGCAGATAGCTTGAATCGGGCTGTTCTTG CACATGCTAATCGACCAGCATATTCATCATTGGAGAGAGTGATACAGCAAGEST: gi|88965704|gb|CI006600.1|CI006600
genomic: CCCAGAGTACAGGCAGAATGTTGCAGATAGCTTGAATCGGGCTGTTCTTGgtatgttcta ... tcaatgacagCACATGCTAATCGACCAGCATATTCATCATTGGAGAGAGTGATACAGCAAG
EST: CCCAGAGTACAGGCAGAATGTTGCAGATAGCTTGAATCGGGCTGTTCTTG CACATGCTAATCGACCAGCATATTCATCATTGGAGAGAGTGATACAGCAAGEST: gi|117234957|gb|CT847981.1|CT847981
genomic: CCCAGAGTACAGGCAGAATGTTGCAGATAGCTTGAATCGGGCTGTTCTTGgtatgttcta ... tcaatgacagCACATGCTAATCGACCAGCATATTCATCATTGGAGAGAGTGATACAGCAAG
EST: CCCAGAGTACAGGCAGAATGTTGCAGATAGCTTGAATCGGGCTGTTCTTG CACATGCTAATCGACCAGCATATTCATCATTGGAGAGAGTGATACAGCAAG
genomic: CCCAGAGTACAGGCAGAATGTTGCAGATAGCTTGAATCGGGCTGTTCTTGgtatgttcta ... tcaatgacagCACATGCTAATCGACCAGCATATTCATCATTGGAGAGAGTGATACAGCAAG
gtggtctcatccgctgatgacacgattgtgatctttgtctcatgatcaatgacagCACATGCTAATCGACCAGCATATTCATCATTGGAGAGAGTGATACAGCAAGCAACTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAG
cgctgat putative branch site (score: 4)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttctaagatattgttcttggtatgttctaagatactatttgctgtggtctcatccgctgatgacacgattgtgatctttgtctcatgatcaatgacagCACATGCTAATCGACCAGCATATTCATCATTGGAGAGAGTGATACAGCAAGCAACTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA