1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aaaaatgccttatttagggttgatactgtgaatgaatacctattaacatttcagaatctgttaatgacttatcatatctgacacccttgtttctttacagGGTTGCAGCAACAAAAAGTCCAGTGATATTTATTGGAACAGGAGAACACATCGATGAGTTTGAAGTTTTTGATGTGAAACCATTTGTCAGTCGTCTTTTA
species | Oryza sativa |
transcript | LOC_Os01g56600.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATTGTCACTAAAATGGATGGCCATGCGAAAGGAGGTGGCGCACTTAGCGC GGTTGCAGCAACAAAAAGTCCAGTGATATTTATTGGAACAGGAGAACGCATEST: gi|24208427|gb|AU225454.1|AU225454
genomic: ATTGTCACTAAAATGGATGGCCATGCGAAAGGAGGTGGCGCACTTAGCGCgttagtattc ... ttctttacagGGTTGCAGCAACAAAAAGTCCAGTGATATTTATTGGAACAGGAGAACACAT
EST: ATTGTCACTAAAATGGATGGCCATGCGAAAGGAGGTGGCGCACTTAGCGC GGTTGCAGCAACAAAAAGTCCAGTGATATTTATTGGAACAGGAGAACACAT
genomic: ATTGTCACTAAAATGGATGGCCATGCGAAAGGAGGTGGCGCACTTAGCGCgttagtattc ... ttctttacagGGTTGCAGCAACAAAAAGTCCAGTGATATTTATTGGAACAGGAGAACACAT
acatttcagaatctgttaatgacttatcatatctgacacccttgtttctttacagGGTTGCAGCAACAAAAAGTCCAGTGATATTTATTGGAACAGGAGAACACATCGATGAGTTTGAAGTTTTTGATGTGAAACCATTTGTCAGTCGTCTTTTA
cacccttgtttcttt CT-rich tract
ttatcatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaaatgccttatttagggttgatactgtgaatgaatacctattaacatttcagaatctgttaatgacttatcatatctgacacccttgtttctttacagGGTTGCAGCAACAAAAAGTCCAGTGATATTTATTGGAACAGGAGAACACATCGATGAGTTTGAAGTTTTTGATGTGAAACCATTTGTCAGTCGTCTTTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- -aatgcct
- - - - - - - - - - tgatact
- - - - - - - - - - - - - -gtgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgtta