1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtattttttctcaagttatcctaattatgccgagggtggagcatttgttaagaaattgctagcaccaactctagttattgcatgttctgatatcaaagcctcaactctcccggcttgtttctgtgcagCAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAACAAAAGGGGTCCAAATCAAGGGACGCATGAACTTAAGCCTGAATACAAGAAATCTACAG
species | Oryza sativa |
transcript | LOC_Os01g56550.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TAAGAATCTCATGCAAGAAACTGATCAACCAGAG CAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAACAAAAGGGGTEST: gi|29687102|gb|CB683377.1|CB683377
genomic: TAAGAATCTCATGCAAGAAACTGATCAACCAGAGgtattttttc ... ttctgtgcagCAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAACAAAAGGGGT
EST: AGCCGAATTGGTCTCTTAAGAATCTCATGCAAGAAACTGATCAACCAGAG CAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAACAAAAGGGGTEST: gi|5003585|gb|AU068734.1|AU068734
genomic: AGCCGAATTGGTCTCTTAAGAATCTCATGCAAGAAACTGATCAACCAGAGgtattttttc ... ttctgtgcagCAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAACAAAAGGGGT
EST: AGCCGAATTGGTCTCTTAAGAATCTCATGCAAGAAACTGATCAACCAGAG CAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAACAAAAGGGGTEST: gi|88247838|gb|CI247687.1|CI247687
genomic: AGCCGAATTGGTCTCTTAAGAATCTCATGCAAGAAACTGATCAACCAGAGgtattttttc ... ttctgtgcagCAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAACAAAAGGGGT
EST: AGCCGAATTGGTCTCTTAAGAATCTCATGCAAGAAACTGATCAACCAGAG CAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAACAAAAGGGGTEST: gi|89180162|gb|CI044441.1|CI044441
genomic: AGCCGAATTGGTCTCTTAAGAATCTCATGCAAGAAACTGATCAACCAGAGgtattttttc ... ttctgtgcagCAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAACAAAAGGGGT
EST: AGCCGAATTGGTCTCTTAAGAATCTCATGCAAGAAACTGATCAACCAGAG CAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAACAAAAGGGGTEST: gi|88209380|gb|CI209229.1|CI209229
genomic: AGCCGAATTGGTCTCTTAAGAATCTCATGCAAGAAACTGATCAACCAGAGgtattttttc ... ttctgtgcagCAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAACAAAAGGGGT
EST: AGCCGAATTGGTCTCTTAAGAATCTCATGCAAGAAACTGATCAACCAGAG CAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAACAAAAGGGGTEST: gi|86602342|gb|CI262811.1|CI262811
genomic: AGCCGAATTGGTCTCTTAAGAATCTCATGCAAGAAACTGATCAACCAGAGgtattttttc ... ttctgtgcagCAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAACAAAAGGGGT
EST: AGCCGAATTGGTCTCTTAAGAATCTCATGCAAGAAACTGATCAACCAGAG CAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAACAAAAGGGGTEST: gi|88244723|gb|CI243845.1|CI243845
genomic: AGCCGAATTGGTCTCTTAAGAATCTCATGCAAGAAACTGATCAACCAGAGgtattttttc ... ttctgtgcagCAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAACAAAAGGGGT
EST: ATCCGAATTGGTCTCTTAAGAATCTCATGCAAGAAACTGATCAACCAGAG CAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAACAAAAGGGGTEST: gi|89179034|gb|CI043539.1|CI043539
genomic: AGCCGAATTGGTCTCTTAAGAATCTCATGCAAGAAACTGATCAACCAGAGgtattttttc ... ttctgtgcagCAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAACAAAAGGGGT
EST: AGCCGAATTGGTCTCTTAAGAATCTCATGCAAGAAACTGATCAACCAGAG CAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAACAAAAGGGGTEST: gi|88274430|gb|CI394836.1|CI394836
genomic: AGCCGAATTGGTCTCTTAAGAATCTCATGCAAGAAACTGATCAACCAGAGgtattttttc ... ttctgtgcagCAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAACAAAAGGGGT
EST: GTCTCTTAAGAATCTCATGCAAGAAACTGATCAACCAGAG CAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAACAAAAGGGGTEST: gi|86254112|gb|CI058839.1|CI058839
genomic: GTCTCTTAAGAATCTCATGCAAGAAACTGATCAACCAGAGgtattttttc ... ttctgtgcagCAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAACAAAAGGGGT
EST: AGCCGAATTGGTCTCTTAAGAATCTCATGCAAGAAACTGATCAACCAGAG CAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAACAAAAGGGGTEST: gi|87007171|gb|CI277246.1|CI277246
genomic: AGCCGAATTGGTCTCTTAAGAATCTCATGCAAGAAACTGATCAACCAGAGgtattttttc ... ttctgtgcagCAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAACAAAAGGGGT
EST: AGCCGAATTGGTCTCTTAAGAATCTCATGCAAGAAACTGATCAACCAGAG CAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAACAAAAGGGGTEST: gi|86908622|gb|CI318957.1|CI318957
genomic: AGCCGAATTGGTCTCTTAAGAATCTCATGCAAGAAACTGATCAACCAGAGgtattttttc ... ttctgtgcagCAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAACAAAAGGGGT
EST: AGCCGAATTGGTCTCTTAAGAATCTCATGCAAGAAACTGATCAACCAGAG CAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAACAAAAGGGGTEST: gi|89198476|gb|CI007536.1|CI007536
genomic: AGCCGAATTGGTCTCTTAAGAATCTCATGCAAGAAACTGATCAACCAGAGgtattttttc ... ttctgtgcagCAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAACAAAAGGGGT
EST: AGCCGAATTGGTCTCTTAAGAATCTCATGCAAGAAACTGATCAACCAGAG CAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAACAAAAGGGGTEST: gi|15854620|gb|BI807432.1|BI807432
genomic: AGCCGAATTGGTCTCTTAAGAATCTCATGCAAGAAACTGATCAACCAGAGgtattttttc ... ttctgtgcagCAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAACAAAAGGGGT
EST: A-CCGAATTGGTCTCTTAAGAATCTCATGCAAGAAACTGATCAACCAGA- CAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAAACACAAAGGGEST: gi|88220668|gb|CI220228.1|CI220228
genomic: AGCCGAATTGGTCTCTTAAGAATCTCATGCAAGAAACTGATCAACCAGAGgtattttttc ... ttctgtgcagCAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTAC-AACA-AAAGGG
EST: AGCCGAATTGGTCTCTTAAGAATCTCATGCAAGAAACTGATCAACCAGAG CAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAACAAAAGGGGTEST: gi|89187624|gb|CI115070.1|CI115070
genomic: AGCCGAATTGGTCTCTTAAGAATCTCATGCAAGAAACTGATCAACCAGAGgtattttttc ... ttctgtgcagCAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAACAAAAGGGGT
EST: AGCCGAATTGGTCTCTTAAGAATCTCATGCAAGAAACTGATCAACCAGAG CAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAACAAAAGGGGT
genomic: AGCCGAATTGGTCTCTTAAGAATCTCATGCAAGAAACTGATCAACCAGAGgtattttttc ... ttctgtgcagCAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAACAAAAGGGGT
gttattgcatgttctgatatcaaagcctcaactctcccggcttgtttctgtgcagCAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAACAAAAGGGGTCCAAATCAAGGGACGCATGAACTTAAGCCTGAATACAAGAAATCTACAG
ttctgat putative branch site (score: 3)
cttgtttct putative PPT
atatcaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattttttctcaagttatcctaattatgccgagggtggagcatttgttaagaaattgctagcaccaactctagttattgcatgttctgatatcaaagcctcaactctcccggcttgtttctgtgcagCAATTCTTGAAGGAGATATTGAATGATCTGTGTTTCTACAACAAAAGGGGTCCAAATCAAGGGACGCATGAACTTAAGCCTGAATACAAGAAATCTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA