1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaaggaatctgccttggctccttcatagatactgatatggttctacattacaatgcaaagtatgatcgctaaattataaacgtgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTCACTTTAGCTGGCCTGACTGTTAGGAGTTACCGCTACTATGATCCTGCAA
species | Oryza sativa |
transcript | LOC_Os01g55540.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTTCAAGGCATTATCATGAA CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTCEST: gi|29660055|gb|CB656330.1|CB656330
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTCEST: gi|58606260|gb|CK034293.1|CK034293
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGT-TTCEST: gi|29679665|gb|CB675940.1|CB675940
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTCEST: gi|218483847|gb|FG951547.1|FG951547
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTCEST: gi|33678230|gb|CF306469.1|CF306469
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTCEST: gi|33795088|gb|CF323417.1|CF323417
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: TGGTTCTTTAAGGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTCEST: gi|425867|gb|D22545.1|D22545
genomic: TGGTTCTTTAAGGG-TGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTCEST: gi|58694708|gb|CK083395.1|CK083395
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTCEST: gi|32948296|gb|BP184868.1|BP184868
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTCEST: gi|44667509|gb|CR280943.1|CR280943
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTCEST: gi|58656014|gb|CK044694.1|CK044694
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTCEST: gi|29639571|gb|CB644580.1|CB644580
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTCEST: gi|88358129|gb|CI605054.1|CI605054
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTCEST: gi|33795132|gb|CF323439.1|CF323439
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: GGTTCTTTAAGGGGTGGGAGGGTGAATTTCTTGCAAGGCATTATCATGAA CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTCEST: gi|27576897|gb|CA999591.1|CA999591
genomic: GGTTCTTTAAGGG-TGGGAGG-TGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTCEST: gi|2310287|gb|C26442.1|C26442
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: TGGTTCTTTAAGGGTTGGGAGGTGAATTTCTTTCAAGGCATTATCATGAA CGNACTATATACATCC-ACAGCCAACCTEST: gi|218483959|gb|FG947666.1|FG947666
genomic: TGGTTCTTTAAGGGT-GGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCT
EST: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTCEST: gi|33793733|gb|CF322749.1|CF322749
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTCEST: gi|33794958|gb|CF323359.1|CF323359
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: TGGTTCTTTAAGGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTCEST: gi|218494538|gb|FG968928.1|FG968928
genomic: TGGTTCTTTAAGGG-TGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA CGCACTATATACATCCCACAGCCAACCTGAGGGAATCACCCCAAAGTGTTCEST: gi|32948428|gb|BP185000.1|BP185000
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTCEST: gi|425866|gb|D22544.1|D22544
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTCEST: gi|88304127|gb|CI599815.1|CI599815
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA CGCACTATATACATCCCACAGCCAAC-TGGGG-AATCACCC-AAAGT-TTCEST: gi|29658837|gb|CB655112.1|CB655112
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTCEST: gi|33793380|gb|CF322571.1|CF322571
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTCEST: gi|163926589|gb|EG713605.1|EG713605
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTCEST: gi|88719284|gb|CI742794.1|CI742794
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA CGCACTATATACATCCCANAGCCAACCCTGGGGGAATCACCCCAAAGTGTTEST: gi|2310086|gb|C26241.1|C26241
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACC-TGGGGGAATCACCCCAAAGTGTT
EST: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTCEST: gi|33678676|gb|CF306915.1|CF306915
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTCEST: gi|58675206|gb|CK063893.1|CK063893
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTEST: gi|8527391|gb|AU092206.1|AU092206
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTT
EST: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA CGCACTATATACATCCCACAGCCAACCTGGEST: gi|33677846|gb|CF306085.1|CF306085
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGG
EST: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTCEST: gi|33680310|gb|CF308549.1|CF308549
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTCEST: gi|32948311|gb|BP184883.1|BP184883
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTCEST: gi|33796305|gb|CF324020.1|CF324020
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: GGTTCTTTAAGGGTGGGGAGGGTGAATTTCTTGCAAGGCATTATCATGAA CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTCEST: gi|58672429|gb|CK061115.1|CK061115
genomic: GGTTCTTTAAGGGTGGG-AGG-TGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA CGCACTATATACEST: gi|218478855|gb|FG949686.1|FG949686
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATAC
EST: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTCEST: gi|10794714|gb|AU108680.1|AU108680
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: CTGGTTCTTTAAGGGTGGGAGGTGAATTTTTTGCAAGGCATTATCATGAA CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTNTTCEST: gi|33794428|gb|CF323098.1|CF323098
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTCEST: gi|33685641|gb|CF313880.1|CF313880
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
EST: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAA CGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
genomic: CTGGTTCTTTAAGGGTGGGAGGTGAATTTCTTGCAAGGCATTATCATGAAgtaaggaatc ... tgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTC
tggttctacattacaatgcaaagtatgatcgctaaattataaacgtgttctccagCGCACTATATACATCCCACAGCCAACCTGGGGGAATCACCCCAAAGTGTTCACTTTAGCTGGCCTGACTGTTAGGAGTTACCGCTACTATGATCCTGCAA
cgctaaa putative branch site (score: 201)
tgttctcc putative PPT
taaattataaacgt TA-rich tract