1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgttgtttgcttgtgtttgtgatgctatattgttctgaggacacttaatgattgatgctcataatatattgttttggaactgtactttatcttcatatgtgccagAATTGCGAAGATAACCATTCATGATCAACATTCAGTGGGAGAATCTGCAACAATTAAGAACCATGACATCATGCTAAGTAACAAG
species | Oryza sativa |
transcript | LOC_Os01g55170.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGATTTCTCCATGGAAAGCATACATGCGAAATTTTGAA-CAGTTGGGAA AATTGCGAAGATAACCATTCATGATCAACATTCAGTGTGAGAATCTGCAACEST: gi|2280557|gb|C25052.1|C25052
genomic: CTGATTTCTCCATGGAAAGCATACATGCGAAATTT-GAAACAGTTGGGAAgtatgttgtt ... tatgtgccagAATTGCGAAGATAACCATTCATGATCAACATTCAGTGGGAGAATCTGCAAC
EST: TCTGATTTCTCCATGGAAAGCATACATGCGGAATTTGAAACAGTTNGGNA AATTGCGA-GATAACCATTCAEST: gi|33794161|gb|CF322971.1|CF322971
genomic: TCTGATTTCTCCATGGAAAGCATACATGCGAAATTTGAAACAGTTGGGAAgtatgttgtt ... tatgtgccagAATTGCGAAGATAACCATTCA
EST: CTGATTTCTCCATGGAAAGCATACATGCGAAATTTGAAACAGTTGGGAA AATTGCGAAGATAACCATTCATGATCAACATTCAGTGGGAGAATCTGCAAC
genomic: CTGATTTCTCCATGGAAAGCATACATGCGAAATTTGAAACAGTTGGGAAgtatgttgtt ... tatgtgccagAATTGCGAAGATAACCATTCATGATCAACATTCAGTGGGAGAATCTGCAAC
attgatgctcataatatattgttttggaactgtactttatcttcatatgtgccagAATTGCGAAGATAACCATTCATGATCAACATTCAGTGGGAGAATCTGCAACAATTAAGAACCATGACATCATGCTAAGTAACAAG
gattgat putative branch site (score: 68)
tcttcat putative PPT
tcataatatattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttgtttgcttgtgtttgtgatgctatattgttctgaggacacttaatgattgatgctcataatatattgttttggaactgtactttatcttcatatgtgccagAATTGCGAAGATAACCATTCATGATCAACATTCAGTGGGAGAATCTGCAACAATTAAGAACCATGACATCATGCTAAGTAACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC