1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtcagtaaattagtcctgacatttgtgctttgataaggatccttcatgcatttggattgtttaaagtgctattactttgctgcttaacatgacttttttttccatgttcgttgaaaattgcaacatatatagGGTATGGGAATCCCTGTGGGAAAGCTTGCACTATACACAGCCCTTGGAGGTGTCCGGCCTTCTGCT
species | Oryza sativa |
transcript | LOC_Os01g54030.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGTTACTGATGGTGAGCGCATTTTAGGTCTCGGGGATCTTGGTTGCCAG GGTATGGGAATCCCTGTGGGAAAGCTTGCACTATACACAGCCCTTGGAGGTEST: gi|218487889|gb|FG948416.1|FG948416
genomic: TTGTTACTGATGGTGAGCGCATTTTAGGTCTCGGGGATCTTGGTTGCCAGgtcagtaaat ... acatatatagGGTATGGGAATCCCTGTGGGAAAGCTTGCACTATACACAGCCCTTGGAGGT
EST: TTGTTACTGATGGTGAGCGCATTTTAGGTCTCGGGGATCTTGGTTGCCAG GGTATGGGAATCCCTGTGGGAAAGCTTGCACTATACACAGCCEST: gi|218490963|gb|FG955474.1|FG955474
genomic: TTGTTACTGATGGTGAGCGCATTTTAGGTCTCGGGGATCTTGGTTGCCAGgtcagtaaat ... acatatatagGGTATGGGAATCCCTGTGGGAAAGCTTGCACTATACACAGCC
EST: TTGTTACTGATGGTGAGCGCATTTTAGGTCTCGGGGATCTTGGTTGCCAG GGTATGGGAATCCCTGTGGGAAAGCTTGCACTATACACAGCCCTTGGAGGT
genomic: TTGTTACTGATGGTGAGCGCATTTTAGGTCTCGGGGATCTTGGTTGCCAGgtcagtaaat ... acatatatagGGTATGGGAATCCCTGTGGGAAAGCTTGCACTATACACAGCCCTTGGAGGT
tgctgcttaacatgacttttttttccatgttcgttgaaaattgcaacatatatagGGTATGGGAATCCCTGTGGGAAAGCTTGCACTATACACAGCCCTTGGAGGTGTCCGGCCTTCTGCT
gcttaac putative branch site (score: 25)
actttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtaaattagtcctgacatttgtgctttgataaggatccttcatgcatttggattgtttaaagtgctattactttgctgcttaacatgacttttttttccatgttcgttgaaaattgcaacatatatagGGTATGGGAATCCCTGTGGGAAAGCTTGCACTATACACAGCCCTTGGAGGTGTCCGGCCTTCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG