1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttagtgactgatttcgttatacttgtagcattaaatgtctttgaaccttgtataaatgtatgtatccacttcaacttctgcactggatgattgtcacatcaattaatattataacatttggatctttggtatgatgaagGTGATTAACATGGAATGGGGAAACTTCAAGTCAGAAAGGCTTCCTCGTTCAGATTACGATAATGCCTTGGACTTTGAAAGTTTAAACCCAGGCGAGCAGG
species | Oryza sativa |
transcript | LOC_Os01g53930.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAAATGCAATTCCAAAATGGACTGGATTACTACCTAGATCAGGAAATATG GTGATTAACATEST: gi|58655773|gb|CK044453.1|CK044453
genomic: CAAATGCAATTCCAAAATGGACTGGATTACTACCTAGATCAGGAAATATGgttagtgact ... tatgatgaagGTGATTAACAT
EST: CAAATGCAATTCCAAAATGGACTGGACTACTACCTAGATCAGGAAATATG GTGATTAACATGGAATGGGGAAACTTCAAGTCAGAAEST: gi|58661416|gb|CK050096.1|CK050096
genomic: CAAATGCAATTCCAAAATGGACTGGATTACTACCTAGATCAGGAAATATGgttagtgact ... tatgatgaagGTGATTAACATGGAATGGGGAAACTTCAAGTCAGAA
EST: CAAATGCAATTCCAAAATGGACTGGACTACTACCTAGATCAGGAAATATG GTGATTAACATGGAATGGGGAAACTTCAAGTCAGAAAGGCTTCCTCGTTCAEST: gi|2796819|gb|AA750113.1|AA750113
genomic: CAAATGCAATTCCAAAATGGACTGGATTACTACCTAGATCAGGAAATATGgttagtgact ... tatgatgaagGTGATTAACATGGAATGGGGAAACTTCAAGTCAGAAAGGCTTCCTCGTTCA
EST: CAAATGCAATTCCAAAATGGACTGGACTACTACCTAGATCAGGAAATATG GTGATTAACATGGAATGGGGAAACTTCAAGTCAGAAAGG
genomic: CAAATGCAATTCCAAAATGGACTGGATTACTACCTAGATCAGGAAATATGgttagtgact ... tatgatgaagGTGATTAACATGGAATGGGGAAACTTCAAGTCAGAAAGG
ggatgattgtcacatcaattaatattataacatttggatctttggtatgatgaagGTGATTAACATGGAATGGGGAAACTTCAAGTCAGAAAGGCTTCCTCGTTCAGATTACGATAATGCCTTGGACTTTGAAAGTTTAAACCCAGGCGAGCAGG
ttataac putative branch site (score: 57)
aattaatattataaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtgactgatttcgttatacttgtagcattaaatgtctttgaaccttgtataaatgtatgtatccacttcaacttctgcactggatgattgtcacatcaattaatattataacatttggatctttggtatgatgaagGTGATTAACATGGAATGGGGAAACTTCAAGTCAGAAAGGCTTCCTCGTTCAGATTACGATAATGCCTTGGACTTTGAAAGTTTAAACCCAGGCGAGCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG