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gtgagcttttgctgctttacgctgtttgttgatgaggatgtgtatatgtacttataatcctggcttccttttcatgaacagAAGACACATATTGCTCTTGCTTTTGAAGTACCAGGTGGATGGTTTGAAGAGAAAACTGCCATCATTGTTACTGTTCTTCAG
species | Oryza sativa |
transcript | LOC_Os01g53700.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAAAATCAGTTTATGTGGGAGGAGACTATCGTTGTCAAGCGGACTCTGAC AAGACACATATTGCTCTTGCTTTTGAAGTACCAGGTGGATGGTTTGAAGAGEST: gi|27577068|gb|CA999762.1|CA999762
genomic: CAAAATCAGTTTATGTGGGAGGAGACTATCGTTGTCAAGCGGACTCTGACgtgagctttt ... tcatgaacagAAGACACATATTGCTCTTGCTTTTGAAGTACCAGGTGGATGGTTTGAAGAG
EST: CAAAATCAGTTTATGGGGGAGGAGACTATCGTTGTCAAGCGGACTCTGAC AAGACACATATTGCTCTTGCTTTTGAAGTACCAGGTGGATGGTTTGAAGAGEST: gi|38475250|gb|CF959383.1|CF959383
genomic: CAAAATCAGTTTATGTGGGAGGAGACTATCGTTGTCAAGCGGACTCTGACgtgagctttt ... tcatgaacagAAGACACATATTGCTCTTGCTTTTGAAGTACCAGGTGGATGGTTTGAAGAG
EST: AAAATCAGTTTATAGAGGGAGGAGACTATCGTTGTCAAGCGGACTCTGAC AAGACACATATTGCTCTTGCTTTTGAGGTACCAGGTGGATGGTTTGAAGAGEST: gi|58690219|gb|CK078906.1|CK078906
genomic: AAAATCAGTTTAT-GTGGGAGGAGACTATCGTTGTCAAGCGGACTCTGACgtgagctttt ... tcatgaacagAAGACACATATTGCTCTTGCTTTTGAAGTACCAGGTGGATGGTTTGAAGAG
EST: CAAAATCAGTTTATGTGGGAGGAGACTATCGTTGTCAAGCGGACTCTGAC AAGACACATATTGCTCTTGCTTTTGAGGTACCAGGTGGATGGTTTGAAGAGEST: gi|300215819|gb|HO088445.1|HO088445
genomic: CAAAATCAGTTTATGTGGGAGGAGACTATCGTTGTCAAGCGGACTCTGACgtgagctttt ... tcatgaacagAAGACACATATTGCTCTTGCTTTTGAAGTACCAGGTGGATGGTTTGAAGAG
EST: CAAAATCAGTTTATGTGGGAGGAGACTATCGTTGTCAAGCGGACTCTGAC AAGACACATATTGCTCTTGCTTTTGAGGTACCAGGTGGATGGTTTGAAGAGEST: gi|2311057|gb|C27212.1|C27212
genomic: CAAAATCAGTTTATGTGGGAGGAGACTATCGTTGTCAAGCGGACTCTGACgtgagctttt ... tcatgaacagAAGACACATATTGCTCTTGCTTTTGAAGTACCAGGTGGATGGTTTGAAGAG
EST: CAAAATCAGTTTATGTGGGAGGAGACTATCGTTGTCAAGCGGACTCTGAC AAGACACATATTGCTCTTGCTTTTGAAGTACCANGGTGGATGGTTTGAAGA
genomic: CAAAATCAGTTTATGTGGGAGGAGACTATCGTTGTCAAGCGGACTCTGACgtgagctttt ... tcatgaacagAAGACACATATTGCTCTTGCTTTTGAAGTACCA-GGTGGATGGTTTGAAGA
tgttgatgaggatgtgtatatgtacttataatcctggcttccttttcatgaacagAAGACACATATTGCTCTTGCTTTTGAAGTACCAGGTGGATGGTTTGAAGAGAAAACTGCCATCATTGTTACTGTTCTTCAG
tgttgat putative branch site (score: 35)
tcctggcttccttttc putative PPT
tatatgtacttataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcttttgctgctttacgctgtttgttgatgaggatgtgtatatgtacttataatcctggcttccttttcatgaacagAAGACACATATTGCTCTTGCTTTTGAAGTACCAGGTGGATGGTTTGAAGAGAAAACTGCCATCATTGTTACTGTTCTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA