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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtcttggtacattctatattttgtttgacttggtgcacagtagctgcaatttaagttctgcaaatttggatgaacctatttgttgccagactgacagcacttaatgcacaattgcattcctttttctgtaacttttgctgaacaatacgataatgttgtagGGCATGTACAAGCCTCATTTGTCATGATACATGTGGTTCCGTAGCAAATGTTTTGCTTGGGTTATTGTGGGACTAAATGAACTGCTACGGATGAGGGTTT

Basic information

species Oryza sativa
transcript LOC_Os01g53060.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89193953|gb|CI018271.1|CI018271
EST:     TTGTACCTGTCAACCACTATGAGCAAGTGAAACCTCTAGTATACCTTCAG                         GGCATGTACAAGCCTCATTTGTCATGATACATGTGGTTCCGTAGCAAATGT
genomic: TTCTACCTGTCAACCACTATGAGCAAGTGAAACCTCTAGTATACCTTCAGgttggtcttg ... aatgttgtagGGCATGTACAAGCCTCATTTGTCATGATACATGTGGTTCCGTAGCAAATGT
EST: gi|38477210|gb|CF961343.1|CF961343
EST:     TTCTACCTGTCAACCACTATGAGCAAGTGAAACCTCTAGTATACCTTCAG                         GGCATGTACAAGCCTCATTTGTCATGATACATGTGGTTCCGTAGCAAATGT
genomic: TTCTACCTGTCAACCACTATGAGCAAGTGAAACCTCTAGTATACCTTCAGgttggtcttg ... aatgttgtagGGCATGTACAAGCCTCATTTGTCATGATACATGTGGTTCCGTAGCAAATGT
EST: gi|88250040|gb|CI249889.1|CI249889
EST:     TTCTACCTGTCAACCACTATGAGCAAGTGAAACCTCTAGTATACCTTCAG                         GGCATGTACAAGCCTCATTTGTCATGATACATGTGGTTCCGTAGCAAATGT
genomic: TTCTACCTGTCAACCACTATGAGCAAGTGAAACCTCTAGTATACCTTCAGgttggtcttg ... aatgttgtagGGCATGTACAAGCCTCATTTGTCATGATACATGTGGTTCCGTAGCAAATGT
EST: gi|88956940|gb|CI009142.1|CI009142
EST:     TTCTACCTGTCAACCACTATGAGCAAGTGAAACCTCTAGTATACCTTCAG                         GGCATGTACAAGCCTCATTTGTCATGATACATGTGGTTCCGTAGCAAATGT
genomic: TTCTACCTGTCAACCACTATGAGCAAGTGAAACCTCTAGTATACCTTCAGgttggtcttg ... aatgttgtagGGCATGTACAAGCCTCATTTGTCATGATACATGTGGTTCCGTAGCAAATGT
EST: gi|88442514|gb|CI544081.1|CI544081
EST:     GCAAGTGAAACCTCTAGTATACCTTCAG                         GGCATGTACAAGCCTCATTTGTCATGATACATGTGGTTCCGTAGCAAATGT
genomic: GCAAGTGAAACCTCTAGTATACCTTCAGgttggtcttg ... aatgttgtagGGCATGTACAAGCCTCATTTGTCATGATACATGTGGTTCCGTAGCAAATGT
EST: gi|25806625|gb|CA762586.1|CA762586
EST:     TTCTACCTGTCACCCACTATGAGCAAGTGAAACCTCTAGTATACCTTCAG                         GGCATGTACAAGCCTCATTTGTCATGATACATGTGGTTCCGTAGCAAATGT
genomic: TTCTACCTGTCAACCACTATGAGCAAGTGAAACCTCTAGTATACCTTCAGgttggtcttg ... aatgttgtagGGCATGTACAAGCCTCATTTGTCATGATACATGTGGTTCCGTAGCAAATGT
EST: gi|88233529|gb|CI233378.1|CI233378
EST:     TTCTACCTGTCAACCACTATGAGCAAGTGAAACCTCTAGTATACCTTCAG                         GGCATGTACAAGCCTCATTTGTCATGATACATGTGGTTCCGTAGCAAATGT
genomic: TTCTACCTGTCAACCACTATGAGCAAGTGAAACCTCTAGTATACCTTCAGgttggtcttg ... aatgttgtagGGCATGTACAAGCCTCATTTGTCATGATACATGTGGTTCCGTAGCAAATGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacaattgcattcctttttctgtaacttttgctgaacaatacgataatgttgtagGGCATGTACAAGCCTCATTTGTCATGATACATGTGGTTCCGTAGCAAATGTTTTGCTTGGGTTATTGTGGGACTAAATGAACTGCTACGGATGAGGGTTT
                   ctgtaac  putative branch site (score: 3)
                      taactttt  TA-rich tract