1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gacttcacagctcatgagccaacattcagtttttccttttcgtttctgaattctgatgtcccattttgcttgtttattttttatttttaccatctatcagACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCATTTGAACGGTGCAACGTTGTGGTGGATGAAGTGCCCTGCTGTCCGTGAG
species | Oryza sativa |
transcript | LOC_Os01g51840.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACA ACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCAEST: gi|86881817|gb|CI324104.1|CI324104
genomic: AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACAgtaagttgaa ... catctatcagACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCA
EST: AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACA ACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCAEST: gi|86864482|gb|CI334759.1|CI334759
genomic: AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACAgtaagttgaa ... catctatcagACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCA
EST: AGACATGAATGGCTTCACACCCCGCCAGTCTCTACCTTCTTCTACAAACA ACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCAEST: gi|86884489|gb|CI337057.1|CI337057
genomic: AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACAgtaagttgaa ... catctatcagACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCA
EST: AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACA ACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCAEST: gi|86868088|gb|CI331855.1|CI331855
genomic: AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACAgtaagttgaa ... catctatcagACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCA
EST: AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACA ACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCAEST: gi|89168353|gb|CI109557.1|CI109557
genomic: AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACAgtaagttgaa ... catctatcagACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCA
EST: AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACA ACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCAEST: gi|88987370|gb|CI034334.1|CI034334
genomic: AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACAgtaagttgaa ... catctatcagACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCA
EST: AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACA ACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCAEST: gi|86592238|gb|CI272584.1|CI272584
genomic: AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACAgtaagttgaa ... catctatcagACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCA
EST: AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACA ACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCAEST: gi|86833517|gb|CI336306.1|CI336306
genomic: AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACAgtaagttgaa ... catctatcagACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCA
EST: AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACA ACAGAGCGATCAGAGCTGAATGGAGACGGTGTTGAGGACAACCAACTTCCAEST: gi|86887777|gb|CI319727.1|CI319727
genomic: AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACAgtaagttgaa ... catctatcagACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCA
EST: AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACA ACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCAEST: gi|88983121|gb|CI020685.1|CI020685
genomic: AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACAgtaagttgaa ... catctatcagACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCA
EST: AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACA ACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCAEST: gi|86868827|gb|CI334199.1|CI334199
genomic: AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACAgtaagttgaa ... catctatcagACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCA
EST: AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACA ACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCAEST: gi|38477194|gb|CF961327.1|CF961327
genomic: AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACAgtaagttgaa ... catctatcagACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCA
EST: AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACA ACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCAEST: gi|86833337|gb|CI334932.1|CI334932
genomic: AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACAgtaagttgaa ... catctatcagACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCA
EST: AGACATGAATGGCTTCACACCCCGCCAGTCTCTACCTTCTTCTACAAACA ACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCA
genomic: AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACAgtaagttgaa ... catctatcagACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCA
ctgaattctgatgtcccattttgcttgtttattttttatttttaccatctatcagACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCATTTGAACGGTGCAACGTTGTGGTGGATGAAGTGCCCTGCTGTCCGTGAG
ttctgat putative branch site (score: 3)
ttttttatttttacc putative PPT
attttgcttgtttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gacttcacagctcatgagccaacattcagtttttccttttcgtttctgaattctgatgtcccattttgcttgtttattttttatttttaccatctatcagACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCATTTGAACGGTGCAACGTTGTGGTGGATGAAGTGCCCTGCTGTCCGTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA