1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtacaaagaacaccccagatccaatatacactgttttggttcaagtattgtattgtgaactgagagtaaataaccaaaactttacagCTTCGTGGAAATGCTGGAAGCCATGATCTCCCGTTCTCAGTTGAAACACTTGAATCGCTGCTTAAACTAACTAAAGAAG
species | Oryza sativa |
transcript | LOC_Os01g48990.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGTAAATTGAGGGAAAGAAATCCTGGAAATNCTCTTTTGGAG CTTCGTGGAAATNCTGGAAGCCATGATCTCCCGTTCTCAGTTGAAACACTTEST: gi|88336261|gb|CI648848.1|CI648848
genomic: GGTAAATTGAGGGAAAGAAATCCTGGAAATGCTCTTTTGGAGgtacaaagaa ... aactttacagCTTCGTGGAAATGCTGGAAGCCATGATCTCCCGTTCTCAGTTGAAACACTT
EST: GGTAAATTGAGGGAAAGAAATCCTGGAAATGCTCTTTTGGAG CTTCGTGGAAATGCTGGAAGCCATGATCTCCCGTTCTCAGTTGEST: gi|29626889|gb|CB631900.1|CB631900
genomic: GGTAAATTGAGGGAAAGAAATCCTGGAAATGCTCTTTTGGAGgtacaaagaa ... aactttacagCTTCGTGGAAATGCTGGAAGCCATGATCTCCCGTTCTCAGTTG
EST: AGAACAGGGTAAA-TGAGGGGAAAGAAATCCTGGAAATGCTCTTTTGGAG CTTCGTGGAAATGCTGGAAGCCATGATCTCCCGTTCTCAGTTGAAACACTTEST: gi|88330501|gb|CI633714.1|CI633714
genomic: AGAACAGGGTAAATTGA-GGGAAAGAAATCCTGGAAATGCTCTTTTGGAGgtacaaagaa ... aactttacagCTTCGTGGAAATGCTGGAAGCCATGATCTCCCGTTCTCAGTTGAAACACTT
EST: GGTAAATTGAGGGAAAGAAATCCTGGAAATGCTCTTTTGGAG CTTCGTGGAAATGCTGGAAGCCATGATCTCCCG
genomic: GGTAAATTGAGGGAAAGAAATCCTGGAAATGCTCTTTTGGAGgtacaaagaa ... aactttacagCTTCGTGGAAATGCTGGAAGCCATGATCTCCCG
gttttggttcaagtattgtattgtgaactgagagtaaataaccaaaactttacagCTTCGTGGAAATGCTGGAAGCCATGATCTCCCGTTCTCAGTTGAAACACTTGAATCGCTGCTTAAACTAACTAAAGAAG
aaataac putative branch site (score: 2)
tattgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaaagaacaccccagatccaatatacactgttttggttcaagtattgtattgtgaactgagagtaaataaccaaaactttacagCTTCGTGGAAATGCTGGAAGCCATGATCTCCCGTTCTCAGTTGAAACACTTGAATCGCTGCTTAAACTAACTAAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG