1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaggcctatagctcatgtgctcatgaaccactaactcgaaatgtactaaagcttctcttttgtaatgatctccagAGGTGAAGATGGAGAGCTTCGATTGGGAGTGCGCCGAGCTGCTCAGCTAAAAAATGCATCTCCTTTTCCTGCACTTCATAACCAGATCTCAAATACTAGT
species | Oryza sativa |
transcript | LOC_Os01g48060.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTTATCAACAAGAAGAAGCTAGTATCTGGGGATGCAGTGCTATTCCTCAG AGGTGAAGATGGAGAGCTTCGATTGGGAGTGCGCCGAGCTGCTCAGCTAAAEST: gi|58665936|gb|CK054622.1|CK054622
genomic: TTTATCAACAAGAAGAAGCTAGTATCTGGGGATGCAGTGCTATTCCTCAGgtaggcctat ... tgatctccagAGGTGAAGATGGAGAGCTTCGATTGGGAGTGCGCCGAGCTGCTCAGCTAAA
EST: TTTATCAACAAGAAGAAGCTAGTATCTGGGGATGCAGTGCTGTTTCTCAG AGGTGAAGATGGAGAGCTTCGATTGGGAGTGCGCCGAGCTGCTCAGCTAAAEST: gi|58689818|gb|CK078505.1|CK078505
genomic: TTTATCAACAAGAAGAAGCTAGTATCTGGGGATGCAGTGCTATTCCTCAGgtaggcctat ... tgatctccagAGGTGAAGATGGAGAGCTTCGATTGGGAGTGCGCCGAGCTGCTCAGCTAAA
EST: -TTATCAACAAGAAGAAGCTAGTATCTGGGGATGCAGTGCTGTTTCTCAG AGGTGAAGATGGAGAGCTTCGATTGGGAGTGCGCCGAGCTGCTCAGCTAAA
genomic: TTTATCAACAAGAAGAAGCTAGTATCTGGGGATGCAGTGCTATTCCTCAGgtaggcctat ... tgatctccagAGGTGAAGATGGAGAGCTTCGATTGGGAGTGCGCCGAGCTGCTCAGCTAAA
tcatgaaccactaactcgaaatgtactaaagcttctcttttgtaatgatctccagAGGTGAAGATGGAGAGCTTCGATTGGGAGTGCGCCGAGCTGCTCAGCTAAAAAATGCATCTCCTTTTCCTGCACTTCATAACCAGATCTCAAATACTAGT
tactaaa putative branch site (score: 6)
tctcc putative PPT
ttttgtaat TA-rich tract