1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacgtcagaaattaaactgttttgaaacatagatacattattaaatattaatacatcatagccatttttacatattttgtgcacgcatatctggttgtcacgctctgaagcggtggtttatcttcccaaatgcagTGCCAGGCTGTCAGTGAGGAGGAGATACATGCTATTTTATCGGAGCAATCACTTTACCCTGCAGGGTGGATACAT
species | Oryza sativa |
transcript | LOC_Os01g47262.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACTATGTGACTATGTTGATCATACCGAAGCAAGAAGCAACTGCTCATTCT TGCCAGGCTGTCAGTGAGGAGGAGATACATGCTATTTTATCGGAGCAATCAEST: gi|218493474|gb|FG952533.1|FG952533
genomic: ACTATGTGACTATGTTGATCATACCAAAGCAAGAAGCAACTGCTCATTCTgtacgtcaga ... ccaaatgcagTGCCAGGCTGTCAGTGAGGAGGAGATACATGCTATTTTATCGGAGCAATCA
EST: TACCAAAGCAAGAAGCAACTGCTCATTCT TGCCAGGCTGTCAGTGAGGAGGAGATACATGCTATTTTATCGGAGCAATCAEST: gi|33658750|gb|CF281363.1|CF281363
genomic: TACCAAAGCAAGAAGCAACTGCTCATTCTgtacgtcaga ... ccaaatgcagTGCCAGGCTGTCAGTGAGGAGGAGATACATGCTATTTTATCGGAGCAATCA
EST: ACTATGTGACTATGTTGATCATACCAAAGCAAGAAGCAACTGCTCATTCT TGCCAGGCTGTCAGTGAGGAGGAGATACATGCTATTTTATCGGAGCAATCAEST: gi|29670555|gb|CB666830.1|CB666830
genomic: ACTATGTGACTATGTTGATCATACCAAAGCAAGAAGCAACTGCTCATTCTgtacgtcaga ... ccaaatgcagTGCCAGGCTGTCAGTGAGGAGGAGATACATGCTATTTTATCGGAGCAATCA
EST: ACTATGTGACTATGTTGATCATACCAAAGCAAGAAGCAACTGCTCATTCT TGCCAGGCTGTCAGTGAGGAGGAGATACATGCTATTTTATCGGAGCAATCAEST: gi|86496637|gb|CI139270.1|CI139270
genomic: ACTATGTGACTATGTTGATCATACCAAAGCAAGAAGCAACTGCTCATTCTgtacgtcaga ... ccaaatgcagTGCCAGGCTGTCAGTGAGGAGGAGATACATGCTATTTTATCGGAGCAATCA
EST: ATCATACCAAAGCAAGAAGCAACTGCTCATTCT TGCCAGGCTGTCAGTGAGGAGGAGATACATGCTATTTTATCGGAGCAATCA
genomic: ATCATACCAAAGCAAGAAGCAACTGCTCATTCTgtacgtcaga ... ccaaatgcagTGCCAGGCTGTCAGTGAGGAGGAGATACATGCTATTTTATCGGAGCAATCA
gcacgcatatctggttgtcacgctctgaagcggtggtttatcttcccaaatgcagTGCCAGGCTGTCAGTGAGGAGGAGATACATGCTATTTTATCGGAGCAATCACTTTACCCTGCAGGGTGGATACAT
tttatcttccc CT-rich tract
tttatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtcagaaattaaactgttttgaaacatagatacattattaaatattaatacatcatagccatttttacatattttgtgcacgcatatctggttgtcacgctctgaagcggtggtttatcttcccaaatgcagTGCCAGGCTGTCAGTGAGGAGGAGATACATGCTATTTTATCGGAGCAATCACTTTACCCTGCAGGGTGGATACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA