1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagtactcggagaaacaataacactacactgaatatcgtatttcctttcatgttgtcagtgtcgacaattaattcagacatcgatttatcggtctctgcatttatgctttcagGTCACCATGGTTTTATACGAGGTTCTTCGGTTGTACCCGCCGGCGATCGTCTTCAGCCGGAAGACGTACAAGGAGATGGAGATCGGGGGCGTCGTGTACC
species | Oryza sativa |
transcript | LOC_Os01g43774.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGTTTGGGAGGGACAAACCTGAGTACGAAGGCCTCAGCCGACTCAAGACG GTCACCATGGTTTTATACGAGGTTCTTCGGTTGTACCCGCCGGCGATCGTCEST: gi|87036263|gb|CI190885.1|CI190885
genomic: TGTTTGGGAGGGACAAACCTGAGTACGAAGGCCTCAGCCGACTCAAGACGgtaagtactc ... atgctttcagGTCACCATGGTTTTATACGAGGTTCTTCGGTTGTACCCGCCGGCGATCGTC
EST: TGTTTGGGAGGGACAAACCTGAGTACGAAGGCCTCAGCCGACTCAAGACG GTCACCATGGTTTTATACGAGGTTCTTCGGTTGTACCCGCCGGCGATCGTCEST: gi|86505973|gb|CI148606.1|CI148606
genomic: TGTTTGGGAGGGACAAACCTGAGTACGAAGGCCTCAGCCGACTCAAGACGgtaagtactc ... atgctttcagGTCACCATGGTTTTATACGAGGTTCTTCGGTTGTACCCGCCGGCGATCGTC
EST: CTCAGCCGACTCAAGACG GTCACCATGGTTTTATACGAGGTTCTTCGGTTGTACCCGCCGGCGATCGTCEST: gi|55828197|gb|AU067869.2|AU067869
genomic: CTCAGCCGACTCAAGACGgtaagtactc ... atgctttcagGTCACCATGGTTTTATACGAGGTTCTTCGGTTGTACCCGCCGGCGATCGTC
EST: AAACCTGAGTACGAAGGCNTCAGCCGACTCAAGACG GTCACCATGGTTTTATACGAGGTTCTTCGGTTGTACCCGCCGGCGATCGTCEST: gi|87039527|gb|CI194149.1|CI194149
genomic: AAACCTGAGTACGAAGGCCTCAGCCGACTCAAGACGgtaagtactc ... atgctttcagGTCACCATGGTTTTATACGAGGTTCTTCGGTTGTACCCGCCGGCGATCGTC
EST: TGTTTGGGAGGGACAAACCTGAGTACGAAGGCCTCAGCCGACTCAAGACG GTCACCATGGTTTTATACGAGGTTCTTCGGTTGTACCCGCCGGCGATCGTCEST: gi|55828198|gb|AU067871.2|AU067871
genomic: TGTTTGGGAGGGACAAACCTGAGTACGAAGGCCTCAGCCGACTCAAGACGgtaagtactc ... atgctttcagGTCACCATGGTTTTATACGAGGTTCTTCGGTTGTACCCGCCGGCGATCGTC
EST: AAACCTGAGTACGAAGGCTTCAGCCGACTCAAGACG GTCACCATGGTTTTATACGAGGTTCTTCGGTTGTACCCGCCGGCGATCGTC
genomic: AAACCTGAGTACGAAGGCCTCAGCCGACTCAAGACGgtaagtactc ... atgctttcagGTCACCATGGTTTTATACGAGGTTCTTCGGTTGTACCCGCCGGCGATCGTC
gtgtcgacaattaattcagacatcgatttatcggtctctgcatttatgctttcagGTCACCATGGTTTTATACGAGGTTCTTCGGTTGTACCCGCCGGCGATCGTCTTCAGCCGGAAGACGTACAAGGAGATGGAGATCGGGGGCGTCGTGTACC
aattaat putative branch site (score: 3)
tgctttc putative PPT
acaattaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtactcggagaaacaataacactacactgaatatcgtatttcctttcatgttgtcagtgtcgacaattaattcagacatcgatttatcggtctctgcatttatgctttcagGTCACCATGGTTTTATACGAGGTTCTTCGGTTGTACCCGCCGGCGATCGTCTTCAGCCGGAAGACGTACAAGGAGATGGAGATCGGGGGCGTCGTGTACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC